CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo1g138800
(
Brassica oleracea
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bo1g138800
T292304_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT3G12910
M07204_2.00
Arabidopsis thaliana
YGSCGKNDNDDHNMCGB
VCGKNDHHNHNMCGSCR
Dap-seq
OMalley et al.(2016)
AT3G12910_col_a
0.995
0.947
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.931
0.553
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.931
0.553
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY
RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.931
0.553
NAC48
M11084_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC6_01
0.929
0.544
NAC101
M07241_2.00
Arabidopsis thaliana
TGCKTVNDNHNYAMG
CKTRNDNHNBAMGCA
Dap-seq
OMalley et al.(2016)
VND6_colamp_a
0.881
0.526
NAC101
M07242_2.00
Arabidopsis thaliana
TTGCKTVHDNNNYAMGYHWHN
NDWDRCKTRNNNHDBAMGCAA
Dap-seq
OMalley et al.(2016)
VND6_col_v31
0.881
0.526
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo1g138800.1
NAC/NAM
25
153
LPGFRFHPTDEELVGFYLSKKVFLKKSSKIDEIISQIDIYKFDPWDLPRSRNTEKESYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDGSSKAVIGLKKTLVYYLGSAGKGSKTDWMMHEFRL
Links
Other
NAC/NAM
family TFs
Other
Brassica oleracea
TFs
233 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NCOA3
Anolis carolinensis
ENSACAG00000016334
N
0.000
ENSPPYG00000011103
Pongo abelii
ENSPPYG00000011103
N
0.000
ENSPSIG00000011898
Pelodiscus sinensis
ENSPSIG00000011898
N
0.000
NCOA3
Pan troglodytes
ENSPTRG00000013592
N
0.000
NCOA3
Sorex araneus
ENSSARG00000005155
N
0.000
NCOA3
Taeniopygia guttata
ENSTGUG00000008993
N
0.000
NCOA3
Takifugu rubripes
ENSTRUG00000004450
N
0.000
ENSXMAG00000017470
Xiphophorus maculatus
ENSXMAG00000017470
N
0.000
Aan_R015846
Calypte anna
Aan_R015846
N
0.000
Afo_R002527
Aptenodytes forsteri
Afo_R002527
N
0.000
Brh_R004714
Buceros rhinoceros
Brh_R004714
N
0.000
Cmyd_10017429
Chelonia mydas
Cmyd_10017429
N
0.000
ENSMMUP00000015773
Macaca fascicularis
ENSMMUP00000015773
N
0.000
Gfo_R009610
Geospiza fortis
Gfo_R009610
N
0.000
Tal_R011643
Tyto alba
Tal_R011643
N
0.000
ncoa3
Xenopus tropicalis
XB-GENE-486618
N
0.000
ncoa3.S
Xenopus laevis
XB-GENE-865628
N
0.000
ENSPANG00000001325
Papio anubis
ENSPANG00000001325
N
0.000
NCOA3
Oryzias latipes
ENSORLG00000012143
N
0.000
ENSONIG00000017075
Oreochromis niloticus
ENSONIG00000017075
N
0.000
ENSAMXG00000008788
Astyanax mexicanus
ENSAMXG00000008788
N
0.000
NCOA3
Callithrix jacchus
ENSCJAG00000016602
N
0.000
ENSCSAG00000014910
Chlorocebus sabaeus
ENSCSAG00000014910
N
0.000
ENSFALG00000012895
Ficedula albicollis
ENSFALG00000012895
N
0.000
NCOA3
Homo sapiens
ENSG00000124151
N
0.000
NCOA3
Gasterosteus aculeatus
ENSGACG00000015221
N
0.000
NCOA3
Gallus gallus
ENSGALG00000004570
N
0.000
ENSGGOG00000002127
Gorilla gorilla
ENSGGOG00000002127
N
0.000
ENSGGOG00000025131
Gorilla gorilla
ENSGGOG00000025131
N
0.000
ENSGMOG00000014139
Gadus morhua
ENSGMOG00000014139
N
0.000
ENSLACG00000006885
Latimeria chalumnae
ENSLACG00000006885
N
0.000
NCOA3
Meleagris gallopavo
ENSMGAG00000004414
N
0.000
NCOA3
Microcebus murinus
ENSMICG00000006798
N
0.000
NCOA3
Macaca mulatta
ENSMMUG00000012020
N
0.000
ENSNLEG00000006923
Nomascus leucogenys
ENSNLEG00000006923
N
0.000
NCOA3
Ornithorhynchus anatinus
ENSOANG00000012027
N
0.000
XP_002933204
Xenopus tropicalis
XP_002933204
N
0.000