Bo1g138800 (Brassica oleracea)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bo1g138800 T292304_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G12910
M07204_2.00 		Arabidopsis thaliana
YGSCGKNDNDDHNMCGB
VCGKNDHHNHNMCGSCR		 Dap-seq
OMalley et al.(2016)
AT3G12910_col_a 		0.995 0.947
NAC002
M00970_2.00 		Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN		 PBM
Lindemose et al.(2014)
ATAF1 		0.931 0.553
NAC002
M07159_2.00 		Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM		 Dap-seq
OMalley et al.(2016)
ATAF1_col_a 		0.931 0.553
NAC002
M07160_2.00 		Arabidopsis thaliana
YACGY
RCGTR		 Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a 		0.931 0.553
NAC48
M11084_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$NAC6_01 		0.929 0.544
NAC101
M07241_2.00 		Arabidopsis thaliana
TGCKTVNDNHNYAMG
CKTRNDNHNBAMGCA		 Dap-seq
OMalley et al.(2016)
VND6_colamp_a 		0.881 0.526
NAC101
M07242_2.00 		Arabidopsis thaliana
TTGCKTVHDNNNYAMGYHWHN
NDWDRCKTRNNNHDBAMGCAA		 Dap-seq
OMalley et al.(2016)
VND6_col_v31 		0.881 0.526
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g138800.1 NAC/NAM 25 153

Links

Other NAC/NAM family TFs
Other Brassica oleracea TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCOA3 Anolis carolinensis ENSACAG00000016334 N 0.000
ENSPPYG00000011103 Pongo abelii ENSPPYG00000011103 N 0.000
ENSPSIG00000011898 Pelodiscus sinensis ENSPSIG00000011898 N 0.000
NCOA3 Pan troglodytes ENSPTRG00000013592 N 0.000
NCOA3 Sorex araneus ENSSARG00000005155 N 0.000
NCOA3 Taeniopygia guttata ENSTGUG00000008993 N 0.000
NCOA3 Takifugu rubripes ENSTRUG00000004450 N 0.000
ENSXMAG00000017470 Xiphophorus maculatus ENSXMAG00000017470 N 0.000
Aan_R015846 Calypte anna Aan_R015846 N 0.000
Afo_R002527 Aptenodytes forsteri Afo_R002527 N 0.000
Brh_R004714 Buceros rhinoceros Brh_R004714 N 0.000
Cmyd_10017429 Chelonia mydas Cmyd_10017429 N 0.000
ENSMMUP00000015773 Macaca fascicularis ENSMMUP00000015773 N 0.000
Gfo_R009610 Geospiza fortis Gfo_R009610 N 0.000
Tal_R011643 Tyto alba Tal_R011643 N 0.000
ncoa3 Xenopus tropicalis XB-GENE-486618 N 0.000
ncoa3.S Xenopus laevis XB-GENE-865628 N 0.000
ENSPANG00000001325 Papio anubis ENSPANG00000001325 N 0.000
NCOA3 Oryzias latipes ENSORLG00000012143 N 0.000
ENSONIG00000017075 Oreochromis niloticus ENSONIG00000017075 N 0.000
ENSAMXG00000008788 Astyanax mexicanus ENSAMXG00000008788 N 0.000
NCOA3 Callithrix jacchus ENSCJAG00000016602 N 0.000
ENSCSAG00000014910 Chlorocebus sabaeus ENSCSAG00000014910 N 0.000
ENSFALG00000012895 Ficedula albicollis ENSFALG00000012895 N 0.000
NCOA3 Homo sapiens ENSG00000124151 N 0.000
NCOA3 Gasterosteus aculeatus ENSGACG00000015221 N 0.000
NCOA3 Gallus gallus ENSGALG00000004570 N 0.000
ENSGGOG00000002127 Gorilla gorilla ENSGGOG00000002127 N 0.000
ENSGGOG00000025131 Gorilla gorilla ENSGGOG00000025131 N 0.000
ENSGMOG00000014139 Gadus morhua ENSGMOG00000014139 N 0.000
ENSLACG00000006885 Latimeria chalumnae ENSLACG00000006885 N 0.000
NCOA3 Meleagris gallopavo ENSMGAG00000004414 N 0.000
NCOA3 Microcebus murinus ENSMICG00000006798 N 0.000
NCOA3 Macaca mulatta ENSMMUG00000012020 N 0.000
ENSNLEG00000006923 Nomascus leucogenys ENSNLEG00000006923 N 0.000
NCOA3 Ornithorhynchus anatinus ENSOANG00000012027 N 0.000
XP_002933204 Xenopus tropicalis XP_002933204 N 0.000