Bo3g062700 (Brassica oleracea)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bo3g062700 T292353_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC050
M07200_2.00 		Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a 		0.933 0.930
ANAC050
M07201_2.00 		Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a 		0.933 0.930
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g062700.1 NAC/NAM 23 149

Links

Other NAC/NAM family TFs
Other Brassica oleracea TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra001365 Brassica rapa Bra001365 I 0.974
Bo5g137360 Brassica oleracea Bo5g137360 I 0.955
Bra029844 Brassica rapa Bra029844 I 0.955
Bo3g062710 Brassica oleracea Bo3g062710 I 0.953
Bra034119 Brassica rapa Bra034119 I 0.949
Bo1g143840 Brassica oleracea Bo1g143840 I 0.949
Bra034118 Brassica rapa Bra034118 I 0.941
Bo1g143850 Brassica oleracea Bo1g143850 I 0.941
Bra001366 Brassica rapa Bra001366 I 0.940
ANAC052 Arabidopsis thaliana AT3G10490 I 0.934
Bostr.22252s0011 Boechera stricta Bostr.22252s0011 I 0.933
Bostr.22252s0012 Boechera stricta Bostr.22252s0012 I 0.933
Carubv10013694m.g Capsella rubella Carubv10013694m.g I 0.933
ANAC050 Arabidopsis thaliana AT3G10480 D 0.933
Cagra.0834s0029 Capsella grandiflora Cagra.0834s0029 I 0.933
ANAC052 Arabidopsis lyrata fgenesh2_kg.3__1083__AT3G10490.2 I 0.933
ANAC050 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000864 I 0.933
Carubv10013564m.g Capsella rubella Carubv10013564m.g I 0.930
Cagra.0834s0028 Capsella grandiflora Cagra.0834s0028 I 0.930
Thhalv10020717m.g Eutrema salsugineum Thhalv10020717m.g I 0.930
Thhalv10020745m.g Eutrema salsugineum Thhalv10020745m.g I 0.930
orange1.1g014130m.g Citrus sinensis orange1.1g014130m.g I 0.894
Ciclev10031606m.g Citrus clementina Ciclev10031606m.g I 0.894
gene23561-v1.0-hybrid Fragaria vesca gene23561-v1.0-hybrid I 0.891
Gorai.009G309300 Gossypium raimondii Gorai.009G309300 I 0.891
Gorai.012G007000 Gossypium raimondii Gorai.012G007000 I 0.888
cassava22912.valid.m1 Manihot esculenta cassava22912.valid.m1 I 0.882
Lus10037939.g Linum usitatissimum Lus10037939.g I 0.881
Lus10038670.g Linum usitatissimum Lus10038670.g I 0.881
TCM_043357 Theobroma cacao TCM_043357 I 0.876
GRMZM2G125777 Zea mays GRMZM2G125777 I 0.875
POPTR_0010s23630 Populus trichocarpa POPTR_0010s23630 I 0.873
SapurV1A.0213s0310 Salix purpurea SapurV1A.0213s0310 I 0.873
Cagra.9217s0020 Capsella grandiflora Cagra.9217s0020 I 0.873