CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo5g002910
(
Brassica oleracea
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bo5g002910
T292398_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC004
M07161_2.00
Arabidopsis thaliana
CTTVYNYNRYAAGY
RCTTRYNRNRBAAG
Dap-seq
OMalley et al.(2016)
ANAC004_col_a
0.968
0.603
NAC004
M07162_2.00
Arabidopsis thaliana
WVCTTVYNBNRYAAGYWWBNN
NNVWWRCTTRYNVNRBAAGBW
Dap-seq
OMalley et al.(2016)
ANAC004_colamp_a
0.968
0.603
NAC005
M07163_2.00
Arabidopsis thaliana
WWNCTTVYNHHNYAAGTWW
WWACTTRNDDNRBAAGNWW
Dap-seq
OMalley et al.(2016)
ANAC005_col_a
0.944
0.612
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo5g002910.1
NAC/NAM
4
150
PVGYRFRPTDEEIVVHYVRPKNIESNTSHVDEVMNTVDIYSFDPWELRFKSRIKSRDEVVWYFFGCKKRMRNNRQRRTIPSGFWSNTGETKPIIRKKGGGGDHEKIGEKRVFVFKYSSKIPGGSKSKSKSKSKSKSKSDWVMHEYVA
Links
Other
NAC/NAM
family TFs
Other
Brassica oleracea
TFs
17 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy