Bo6g123980 (Brassica oleracea)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bo6g123980 T292439_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SMB
M07184_2.00
Arabidopsis thaliana
TWNCKTVHDNHNYAMGYWAYH

DRTWRCKTRNDNHDBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_col_a
0.966 0.991
SMB
M07185_2.00
Arabidopsis thaliana
TWNCKTVNNNNNYAMG

CKTRNNNNNBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_colamp_a
0.966 0.991
MDP0000762302
M02383_2.00
Malus domestica
NNNAMKHNWN

NWNDMKTNNN
PBM
Weirauch et al.(2014)
pTH9205
0.936 0.851
BRN2
M07217_2.00
Arabidopsis thaliana
CKTVHDNNNYAMGYWA

TWRCKTRNNNHDBAMG
Dap-seq
OMalley et al.(2016)
ANAC070_colamp_a
0.923 0.833
BRN2
M07218_2.00
Arabidopsis thaliana
TWDCKTVHDNHDYAMGYWAHH

DDTWRCKTRHDNHDBAMGHWA
Dap-seq
OMalley et al.(2016)
ANAC070_col
0.923 0.833
NAC012
M00971_2.00
Arabidopsis thaliana
NYAMGYHANN

NNTDRCKTRN
PBM
Lindemose et al.(2014)
SND1
0.917 0.825
OS06G0131700
M02378_2.00
Oryza sativa
NNNNHMDNND

HNNHKDNNNN
PBM
Weirauch et al.(2014)
pTH8356
0.910 0.851
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g123980.1 NAC/NAM 18 146

Links

Other NAC/NAM family TFs
Other Brassica oleracea TFs

280 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZNF789 Homo sapiens ENSG00000198556 D 0.000
ZNF789 Callithrix jacchus ENSCJAG00000015813 I 0.000
ZNF789 Pan troglodytes ENSPTRG00000023303 I 0.000
ENSPPYG00000017380 Pongo abelii ENSPPYG00000017380 I 0.000
ENSPANG00000009920 Papio anubis ENSPANG00000009920 I 0.000
ZNF789 Macaca mulatta ENSMMUG00000020139 I 0.000
ZNF789 Microcebus murinus ENSMICG00000005979 I 0.000
ZNF789 Gorilla gorilla ENSGGOG00000022768 I 0.000
ENSCSAG00000017796 Chlorocebus sabaeus ENSCSAG00000017796 I 0.000
ENSP00000331927 Macaca fascicularis ENSP00000331927 I 0.000