Bo9g004100 (Brassica oleracea)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bo9g004100 T292472_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG

CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.962 0.722
NAC68
M07214_2.00
Arabidopsis thaliana
RCTTVYNBNNYAAGY

RCTTRNNVNRBAAGY
Dap-seq
OMalley et al.(2016)
NTM1_col_a
0.932 0.670
NAC68
M07215_2.00
Arabidopsis thaliana
HDYYRCTTTTTNNHYHYHNNN

NNNDRDRDNNAAAAAGYRRHD
Dap-seq
OMalley et al.(2016)
NTM1_colamp_a
0.932 0.670
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g004100.1 NAC/NAM 5 136

Links

Other NAC/NAM family TFs
Other Brassica oleracea TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra036327 Brassica rapa Bra036327 I 0.992
Carubv10003260m.g Capsella rubella Carubv10003260m.g I 0.970
Bra008553 Brassica rapa Bra008553 I 0.969
Bostr.4825s0023 Boechera stricta Bostr.4825s0023 I 0.967
Bo00853s060 Brassica oleracea Bo00853s060 I 0.963
NAC69 Arabidopsis thaliana AT4G01550 D 0.962
anac069 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002854 I 0.962
Bo6g119080 Brassica oleracea Bo6g119080 I 0.959
Bo9g004090 Brassica oleracea Bo9g004090 I 0.959
Thhalv10028684m.g Eutrema salsugineum Thhalv10028684m.g I 0.955
Bo9g004110 Brassica oleracea Bo9g004110 I 0.948
Bra036326 Brassica rapa Bra036326 I 0.944
Carubv10000489m.g Capsella rubella Carubv10000489m.g I 0.936
anac067 Arabidopsis thaliana AT4G01520 I 0.933
NAC68 Arabidopsis thaliana AT4G01540 D 0.932
Bra036328 Brassica rapa Bra036328 I 0.931
POPTR_0014s10330 Populus trichocarpa POPTR_0014s10330 I 0.930
POPTR_0014s10350 Populus trichocarpa POPTR_0014s10350 I 0.927
POPTR_0014s10360 Populus trichocarpa POPTR_0014s10360 I 0.927
MDP0000214515 Malus domestica MDP0000214515 I 0.924
MDP0000575835 Malus domestica MDP0000575835 I 0.919
Bo9g004070 Brassica oleracea Bo9g004070 I 0.916
SapurV1A.0003s0330 Salix purpurea SapurV1A.0003s0330 I 0.905
Cagra.12529s0001 Capsella grandiflora Cagra.12529s0001 I 0.904
POPTR_0002s18290 Populus trichocarpa POPTR_0002s18290 I 0.903
POPTR_0014s07210 Populus trichocarpa POPTR_0014s07210 I 0.900
SapurV1A.0321s0350 Salix purpurea SapurV1A.0321s0350 I 0.900
POPTR_0002s18310 Populus trichocarpa POPTR_0002s18310 I 0.898
SapurV1A.0321s0360 Salix purpurea SapurV1A.0321s0360 I 0.898
SapurV1A.0321s0340 Salix purpurea SapurV1A.0321s0340 I 0.898
MDP0000311190 Malus domestica MDP0000311190 I 0.891
SapurV1A.0586s0170 Salix purpurea SapurV1A.0586s0170 I 0.889
Bostr.4825s0021 Boechera stricta Bostr.4825s0021 I 0.885
Bra027596 Brassica rapa Bra027596 I 0.885
Bostr.5325s0009 Boechera stricta Bostr.5325s0009 I 0.882
SapurV1A.0024s0340 Salix purpurea SapurV1A.0024s0340 I 0.882
GSMUA_Achr11G07800_001 Musa acuminata GSMUA_Achr11G07800_001 N 0.877
SapurV1A.0162s0450 Salix purpurea SapurV1A.0162s0450 I 0.874
ANAC001 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000119 I 0.872
Bostr.10064s0010 Boechera stricta Bostr.10064s0010 I 0.872
GSMUA_AchrUn_randomG04060_001 Musa acuminata GSMUA_AchrUn_randomG04060_001 I 0.871