CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo9g004110
(
Brassica oleracea
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bo9g004110
T292473_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.967
0.748
NAC68
M07214_2.00
Arabidopsis thaliana
RCTTVYNBNNYAAGY
RCTTRNNVNRBAAGY
Dap-seq
OMalley et al.(2016)
NTM1_col_a
0.909
0.704
NAC68
M07215_2.00
Arabidopsis thaliana
HDYYRCTTTTTNNHYHYHNNN
NNNDRDRDNNAAAAAGYRRHD
Dap-seq
OMalley et al.(2016)
NTM1_colamp_a
0.909
0.704
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo9g004110.1
NAC/NAM
5
133
PVGFRFSPTGQELINHYLKNKVLDKPWLVDEAINEINICAHDPKFLPALSKLDSKDLVWYFFCRREYHVSEKKKGTKRTTPSGFWKATGVDRKIRDKGVEIGIKKTLVYYEGKSTNGAWTPWVMHEYHI
Links
Other
NAC/NAM
family TFs
Other
Brassica oleracea
TFs
72 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra036326
Brassica rapa
Bra036326
I
0.990
Bo00853s060
Brassica oleracea
Bo00853s060
I
0.980
Bra008553
Brassica rapa
Bra008553
I
0.974
Carubv10003260m.g
Capsella rubella
Carubv10003260m.g
I
0.974
Bostr.4825s0023
Boechera stricta
Bostr.4825s0023
I
0.971
anac069
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002854
I
0.967
NAC69
Arabidopsis thaliana
AT4G01550
D
0.967
Bo9g004090
Brassica oleracea
Bo9g004090
I
0.965
Thhalv10028684m.g
Eutrema salsugineum
Thhalv10028684m.g
I
0.965
Bo6g119080
Brassica oleracea
Bo6g119080
I
0.965
Bra036327
Brassica rapa
Bra036327
I
0.964
Bra036328
Brassica rapa
Bra036328
I
0.962
Bo9g004070
Brassica oleracea
Bo9g004070
I
0.961
Bo9g004100
Brassica oleracea
Bo9g004100
I
0.948
anac067
Arabidopsis thaliana
AT4G01520
I
0.938
Bostr.5325s0009
Boechera stricta
Bostr.5325s0009
I
0.933
MTR_8g023840
Medicago truncatula
MTR_8g023840
I
0.926
Carubv10000489m.g
Capsella rubella
Carubv10000489m.g
I
0.922
MDP0000282616
Malus domestica
MDP0000282616
I
0.918
Bo5g002850
Brassica oleracea
Bo5g002850
I
0.913
Bostr.5325s0019
Boechera stricta
Bostr.5325s0019
I
0.911
NAC68
Arabidopsis thaliana
AT4G01540
D
0.909
Ca_20988
Cicer arietinum
Ca_20988
I
0.907
MDP0000575835
Malus domestica
MDP0000575835
I
0.904
Bostr.25375s0002
Boechera stricta
Bostr.25375s0002
I
0.904
Bostr.10064s0010
Boechera stricta
Bostr.10064s0010
I
0.901
Bo5g002810
Brassica oleracea
Bo5g002810
I
0.900
SapurV1A.0003s0330
Salix purpurea
SapurV1A.0003s0330
I
0.899
PRUPE_ppa019780mg
Prunus persica
PRUPE_ppa019780mg
N
0.898
Thhalv10012158m.g
Eutrema salsugineum
Thhalv10012158m.g
I
0.897
Cagra.12529s0001
Capsella grandiflora
Cagra.12529s0001
I
0.895
Bra027596
Brassica rapa
Bra027596
I
0.895
GSMUA_Achr9G10040_001
Musa acuminata
GSMUA_Achr9G10040_001
I
0.893
Bo9g061230
Brassica oleracea
Bo9g061230
I
0.893
gene35013-v1.0-hybrid
Fragaria vesca
gene35013-v1.0-hybrid
N
0.893
GSMUA_Achr11G16860_001
Musa acuminata
GSMUA_Achr11G16860_001
I
0.892
Eucgr.F01463
Eucalyptus grandis
Eucgr.F01463
I
0.892
SapurV1A.0162s0450
Salix purpurea
SapurV1A.0162s0450
I
0.891
ANAC001
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1000119
I
0.890
gene35014-v1.0-hybrid
Fragaria vesca
gene35014-v1.0-hybrid
I
0.889
LPERR04G17350
Leersia perrieri
LPERR04G17350
I
0.886
Pavir.J31204
Panicum virgatum
Pavir.J31204
I
0.886
Carubv10009049m.g
Capsella rubella
Carubv10009049m.g
I
0.885
Cagra.1968s0045
Capsella grandiflora
Cagra.1968s0045
I
0.885
MTR_8g023860
Medicago truncatula
MTR_8g023860
I
0.884
POPTR_0002s18320
Populus trichocarpa
POPTR_0002s18320
I
0.882
gene34006-v1.0-hybrid
Fragaria vesca
gene34006-v1.0-hybrid
N
0.882
Bostr.4825s0021
Boechera stricta
Bostr.4825s0021
I
0.882
Carubv10009451m.g
Capsella rubella
Carubv10009451m.g
I
0.882
Gorai.006G203800
Gossypium raimondii
Gorai.006G203800
I
0.881
Sb08g022560
Sorghum bicolor
Sb08g022560
I
0.881
mgf022344m
Mimulus guttatus
mgf022344m
I
0.881
Gorai.004G125900
Gossypium raimondii
Gorai.004G125900
I
0.880
GSMUA_Achr6G31580_001
Musa acuminata
GSMUA_Achr6G31580_001
I
0.879
SapurV1A.0321s0350
Salix purpurea
SapurV1A.0321s0350
I
0.877
Si022714m.g
Setaria italica
Si022714m.g
I
0.875
Sb02g032230
Sorghum bicolor
Sb02g032230
I
0.873
Sb02g026510
Sorghum bicolor
Sb02g026510
I
0.873
LPERR09G14720
Leersia perrieri
LPERR09G14720
I
0.872
GSMUA_Achr11G07800_001
Musa acuminata
GSMUA_Achr11G07800_001
N
0.872
SapurV1A.0321s0360
Salix purpurea
SapurV1A.0321s0360
I
0.872
SapurV1A.0321s0340
Salix purpurea
SapurV1A.0321s0340
I
0.872
Pavir.Bb02626
Panicum virgatum
Pavir.Bb02626
I
0.871
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
0.871
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
0.871
Si032702m.g
Setaria italica
Si032702m.g
I
0.871
MLOC_37843
Hordeum vulgare
MLOC_37843
I
0.871
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
0.871
Pm028722
Prunus mume
Pm028722
I
0.871
MDP0000214515
Malus domestica
MDP0000214515
I
0.871
Eucgr.J00531
Eucalyptus grandis
Eucgr.J00531
I
0.871
Pavir.Ba01386
Panicum virgatum
Pavir.Ba01386
I
0.871