Bra003478 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra003478 T292528_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC066
M00978_2.00
Arabidopsis thaliana
NBNNHNBNNN

NNNVNDNNVN
PBM
Lindemose et al.(2014)
NST2
0.959 0.956
NAC043
M02370_2.00
Arabidopsis thaliana
NTTACGYWAN

NTWRCGTAAN
PBM
Weirauch et al.(2014)
pTH8161
0.958 0.930
NAC043
M07192_2.00
Arabidopsis thaliana
TRCKTVHDNHNYAMG

CKTRNDNHDBAMGYA
Dap-seq
OMalley et al.(2016)
NST1_colamp_a
0.958 0.930
NAC043
M07193_2.00
Arabidopsis thaliana
RCKTVHDNHNYAMGYWA

TWRCKTRNDNHDBAMGY
Dap-seq
OMalley et al.(2016)
NST1_col_v31
0.958 0.930
OS06G0131700
M02378_2.00
Oryza sativa
NNNNHMDNND

HNNHKDNNNN
PBM
Weirauch et al.(2014)
pTH8356
0.923 0.860
MDP0000762302
M02383_2.00
Malus domestica
NNNAMKHNWN

NWNDMKTNNN
PBM
Weirauch et al.(2014)
pTH9205
0.908 0.886
NAC012
M00971_2.00
Arabidopsis thaliana
NYAMGYHANN

NNTDRCKTRN
PBM
Lindemose et al.(2014)
SND1
0.902 0.877
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra003478.1-P NAC/NAM 12 139

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.13158s0196 Boechera stricta Bostr.13158s0196 I 0.972
Bra007640 Brassica rapa Bra007640 I 0.972
Carubv10019223m.g Capsella rubella Carubv10019223m.g I 0.969
Cagra.0483s0052 Capsella grandiflora Cagra.0483s0052 I 0.969
NST2 Arabidopsis lyrata scaffold_503455.1 I 0.968
Bo6g079180 Brassica oleracea Bo6g079180 I 0.962
Bra040486 Brassica rapa Bra040486 I 0.960
Bo4g197330 Brassica oleracea Bo4g197330 I 0.960
NAC066 Arabidopsis thaliana AT3G61910 D 0.959
Bostr.25993s0090 Boechera stricta Bostr.25993s0090 I 0.958
Carubv10023503m.g Capsella rubella Carubv10023503m.g I 0.958
Cagra.0050s0024 Capsella grandiflora Cagra.0050s0024 I 0.958
Bra004509 Brassica rapa Bra004509 I 0.958
NST1 Arabidopsis lyrata scaffold_403649.1 I 0.958
Thhalv10001506m.g Eutrema salsugineum Thhalv10001506m.g I 0.958
Bo4g006990 Brassica oleracea Bo4g006990 I 0.958
NAC043 Arabidopsis thaliana AT2G46770 D 0.958
PRUPE_ppa020746mg Prunus persica PRUPE_ppa020746mg I 0.946
gene18636-v1.0-hybrid Fragaria vesca gene18636-v1.0-hybrid I 0.946
Pm018292 Prunus mume Pm018292 I 0.946
MDP0000563165 Malus domestica MDP0000563165 I 0.946
POPTR_0014s10060 Populus trichocarpa POPTR_0014s10060 I 0.945
Ca_22425 Cicer arietinum Ca_22425 I 0.945
Ca_22426 Cicer arietinum Ca_22426 I 0.945
MTR_8g024480 Medicago truncatula MTR_8g024480 I 0.945
GLYMA16G02200 Glycine max GLYMA16G02200 I 0.945
LjSGA_027787.1 Lotus japonicus LjSGA_027787.1 I 0.945
Lus10002687.g Linum usitatissimum Lus10002687.g I 0.945
GLYMA07G05660 Glycine max GLYMA07G05660 I 0.945
AMTR_s00113p00077540 Amborella trichopoda AMTR_s00113p00077540 I 0.944
SapurV1A.0162s0220 Salix purpurea SapurV1A.0162s0220 I 0.944
27964.m000369 Ricinus communis 27964.m000369 I 0.943
Lus10030205.g Linum usitatissimum Lus10030205.g I 0.943
TCM_005047 Theobroma cacao TCM_005047 I 0.942
Cla006806 Citrullus lanatus Cla006806 I 0.942
Gorai.007G112500 Gossypium raimondii Gorai.007G112500 I 0.942
Cucsa.120870 Cucumis sativus Cucsa.120870 I 0.942
cassava33021.m1 Manihot esculenta cassava33021.m1 I 0.942
PK04961.1 Cannabis sativa PK04961.1 I 0.941
POPTR_0002s17950 Populus trichocarpa POPTR_0002s17950 I 0.941
Gorai.001G150800 Gossypium raimondii Gorai.001G150800 I 0.939
Eucgr.D01671 Eucalyptus grandis Eucgr.D01671 I 0.936
Cla011508 Citrullus lanatus Cla011508 I 0.936
Aquca_037_00272 Aquilegia coerulea Aquca_037_00272 I 0.936
Cucsa.193460 Cucumis sativus Cucsa.193460 I 0.936
GSMUA_Achr3G12230_001 Musa acuminata GSMUA_Achr3G12230_001 I 0.934
VIT_15s0048g02660 Vitis vinifera VIT_15s0048g02660 I 0.932
GSMUA_Achr9G24450_001 Musa acuminata GSMUA_Achr9G24450_001 I 0.932
GSMUA_AchrUn_randomG21980_001 Musa acuminata GSMUA_AchrUn_randomG21980_001 I 0.931
orange1.1g015853m.g Citrus sinensis orange1.1g015853m.g I 0.930
ANAC012 Vitis vinifera VIT_02s0025g02710 I 0.930
Ciclev10024035m.g Citrus clementina Ciclev10024035m.g I 0.930
mgf022455m Mimulus guttatus mgf022455m I 0.929
PDK_20s1408241g001 Phoenix dactylifera PDK_20s1408241g001 I 0.928
OMERI08G01360 Oryza meridionalis OMERI08G01360 I 0.925
SapurV1A.0003s0530 Salix purpurea SapurV1A.0003s0530 I 0.924
OMERI06G01850 Oryza meridionalis OMERI06G01850 I 0.923
OPUNC06G01800 Oryza punctata OPUNC06G01800 I 0.923
OGLUM06G01950 Oryza glumaepatula OGLUM06G01950 I 0.923
BGIOSGA022006 Oryza indica BGIOSGA022006 I 0.923
OBART06G01950 Oryza barthii OBART06G01950 I 0.923
OB06G11970 Oryza brachyantha OB06G11970 I 0.923
LPERR06G01790 Leersia perrieri LPERR06G01790 I 0.923
OS06G0131700 Oryza sativa OS06G0131700 D 0.923
ORUFI06G01950 Oryza rufipogon ORUFI06G01950 I 0.923
ORGLA06G0019800 Oryza glaberrima ORGLA06G0019800 I 0.923
ONIVA06G02290 Oryza nivara ONIVA06G02290 I 0.923
GSMUA_Achr7G05980_001 Musa acuminata GSMUA_Achr7G05980_001 I 0.921
OS08G0115800 Oryza sativa OS08G0115800 I 0.918
OBART08G01110 Oryza barthii OBART08G01110 I 0.918
MLOC_66924 Hordeum vulgare MLOC_66924 I 0.918
F775_11081 Aegilops tauschii F775_11081 I 0.918
OB08G11290 Oryza brachyantha OB08G11290 I 0.918
ORUFI08G01170 Oryza rufipogon ORUFI08G01170 I 0.918
OPUNC08G01110 Oryza punctata OPUNC08G01110 I 0.918
GRMZM2G092465 Zea mays GRMZM2G092465 I 0.918
ONIVA08G01130 Oryza nivara ONIVA08G01130 I 0.918
Pavir.J20698 Panicum virgatum Pavir.J20698 I 0.918
Pavir.J21162 Panicum virgatum Pavir.J21162 I 0.918
ORGLA08G0004900 Oryza glaberrima ORGLA08G0004900 I 0.918
Traes_7DL_1AD9A3E8D Triticum aestivum Traes_7DL_1AD9A3E8D I 0.918
OGLUM08G01180 Oryza glumaepatula OGLUM08G01180 I 0.918
BGIOSGA027883 Oryza indica BGIOSGA027883 I 0.918
Traes_7AL_B000BC0DD Triticum aestivum Traes_7AL_B000BC0DD I 0.918
Sb07g001550 Sorghum bicolor Sb07g001550 I 0.918
GRMZM2G171395 Zea mays GRMZM2G171395 I 0.916
Sb10g002120 Sorghum bicolor Sb10g002120 I 0.916
LPERR08G01440 Leersia perrieri LPERR08G01440 I 0.916
Si006565m.g Setaria italica Si006565m.g I 0.915
Pavir.J07835 Panicum virgatum Pavir.J07835 I 0.915
Gorai.008G130300 Gossypium raimondii Gorai.008G130300 I 0.914
GRMZM2G069047 Zea mays GRMZM2G069047 I 0.912
cassava32649.m1 Manihot esculenta cassava32649.m1 I 0.912
BRADI3G13727 Brachypodium distachyon BRADI3G13727 I 0.911
SapurV1A.0941s0070 Salix purpurea SapurV1A.0941s0070 I 0.908
POPTR_0001s45250 Populus trichocarpa POPTR_0001s45250 I 0.908
MDP0000140229 Malus domestica MDP0000140229 I 0.908
SapurV1A.2717s0010 Salix purpurea SapurV1A.2717s0010 I 0.908
MDP0000762302 Malus domestica MDP0000762302 D 0.908
Eucgr.E01053 Eucalyptus grandis Eucgr.E01053 I 0.906
POPTR_0011s15640 Populus trichocarpa POPTR_0011s15640 I 0.906
SapurV1A.0131s0060 Salix purpurea SapurV1A.0131s0060 I 0.906
PK22182.1 Cannabis sativa PK22182.1 I 0.905
Lus10017340.g Linum usitatissimum Lus10017340.g I 0.905
Lus10001664.g Linum usitatissimum Lus10001664.g I 0.905
Bostr.3359s0081 Boechera stricta Bostr.3359s0081 I 0.904
Gorai.008G259700 Gossypium raimondii Gorai.008G259700 I 0.904
30068.m002591 Ricinus communis 30068.m002591 I 0.903
TCM_015621 Theobroma cacao TCM_015621 I 0.903
Ciclev10021141m.g Citrus clementina Ciclev10021141m.g I 0.903
orange1.1g014260m.g Citrus sinensis orange1.1g014260m.g I 0.903
gene01881-v1.0-hybrid Fragaria vesca gene01881-v1.0-hybrid I 0.903
cassava42638.valid.m1 Manihot esculenta cassava42638.valid.m1 I 0.903
Gorai.004G129200 Gossypium raimondii Gorai.004G129200 I 0.902
Lus10008271.g Linum usitatissimum Lus10008271.g I 0.902
Lus10033239.g Linum usitatissimum Lus10033239.g I 0.902
ANAC012 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002619 I 0.902
evm.TU.supercontig_37.89 Carica papaya evm.TU.supercontig_37.89 I 0.902
Carubv10011900m.g Capsella rubella Carubv10011900m.g I 0.902
Thhalv10009336m.g Eutrema salsugineum Thhalv10009336m.g I 0.902
Pm024260 Prunus mume Pm024260 I 0.902
PRUPE_ppa006801mg Prunus persica PRUPE_ppa006801mg I 0.902
NAC012 Arabidopsis thaliana AT1G32770 D 0.902
Bo5g049360 Brassica oleracea Bo5g049360 I 0.902
Cagra.14513s0001 Capsella grandiflora Cagra.14513s0001 I 0.902
gene18635-v1.0-hybrid Fragaria vesca gene18635-v1.0-hybrid I 0.899
Bra023288 Brassica rapa Bra023288 I 0.899
cassava45846.m1 Manihot esculenta cassava45846.m1 I 0.898
Gorai.003G077700 Gossypium raimondii Gorai.003G077700 I 0.898
GRMZM2G091490 Zea mays GRMZM2G091490 I 0.896
Bra010183 Brassica rapa Bra010183 I 0.893
Bo5g086900 Brassica oleracea Bo5g086900 I 0.893
Solyc10g005010.2 Solanum lycopersicum Solyc10g005010.2 I 0.891
PGSC0003DMG400011268 Solanum tuberosum PGSC0003DMG400011268 I 0.891
Gorai.006G205300 Gossypium raimondii Gorai.006G205300 I 0.891
orange1.1g018596m.g Citrus sinensis orange1.1g018596m.g I 0.891
Ciclev10006988m.g Citrus clementina Ciclev10006988m.g I 0.888
Gorai.001G048200 Gossypium raimondii Gorai.001G048200 I 0.888
GSMUA_Achr2G20020_001 Musa acuminata GSMUA_Achr2G20020_001 I 0.888
TCM_014939 Theobroma cacao TCM_014939 I 0.888
Eucgr.A02887 Eucalyptus grandis Eucgr.A02887 I 0.888
mgf021916m Mimulus guttatus mgf021916m I 0.887
GSMUA_Achr10G14400_001 Musa acuminata GSMUA_Achr10G14400_001 I 0.885
Cla006372 Citrullus lanatus Cla006372 I 0.884
Cucsa.251620 Cucumis sativus Cucsa.251620 I 0.884
Aquca_030_00252 Aquilegia coerulea Aquca_030_00252 I 0.883
Solyc06g034340.1 Solanum lycopersicum Solyc06g034340.1 I 0.883
VIT_16s0022g00690 Vitis vinifera VIT_16s0022g00690 I 0.883
PRUPE_ppa020139mg Prunus persica PRUPE_ppa020139mg I 0.883
POPTR_0015s14770 Populus trichocarpa POPTR_0015s14770 I 0.883
PGSC0003DMG400021576 Solanum tuberosum PGSC0003DMG400021576 I 0.883
Pm019490 Prunus mume Pm019490 I 0.883
Pm019488 Prunus mume Pm019488 I 0.883
30147.m014211 Ricinus communis 30147.m014211 I 0.883
cassava47039.m1 Manihot esculenta cassava47039.m1 I 0.882
evm.TU.supercontig_3.311 Carica papaya evm.TU.supercontig_3.311 I 0.881
POPTR_0012s14660 Populus trichocarpa POPTR_0012s14660 I 0.878
gene21248-v1.0-hybrid Fragaria vesca gene21248-v1.0-hybrid I 0.878
AMTR_s00068p00207380 Amborella trichopoda AMTR_s00068p00207380 I 0.878
SapurV1A.0129s0210 Salix purpurea SapurV1A.0129s0210 I 0.872
F775_21627 Aegilops tauschii F775_21627 I 0.871
TRIUR3_14543 Triticum urartu TRIUR3_14543 I 0.871