Bra007996 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra007996 T292552_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC030
M00974_2.00
Arabidopsis thaliana
NYACGBMWNN

NNWKVCGTRN
PBM
Lindemose et al.(2014)
VND7
0.951 0.965
NAC037
M07187_2.00
Arabidopsis thaliana
CKTVNDNHNYAMG

CKTRNDNHNBAMG
Dap-seq
OMalley et al.(2016)
VND1_col_a
0.920 0.816
ANAC076
M07224_2.00
Arabidopsis thaliana
TRCKTVHNNHNYAMG

CKTRNDNNDBAMGYA
Dap-seq
OMalley et al.(2016)
VND2_col_a
0.905 0.789
ANAC076
M07225_2.00
Arabidopsis thaliana
TTGCKTVHNNHNYAMGYHAHNNN

NNNDTDRCKTRNDNNDBAMGCAA
Dap-seq
OMalley et al.(2016)
VND2_colamp_a
0.905 0.789
NAC007
M07164_2.00
Arabidopsis thaliana
TTRCKTVHDNNNYAMG

CKTRNNNHDBAMGYAA
Dap-seq
OMalley et al.(2016)
VND4_colamp_a
0.878 0.754
NAC007
M07165_2.00
Arabidopsis thaliana
TGCKTVHDNHDYAMG

CKTRHDNHDBAMGCA
Dap-seq
OMalley et al.(2016)
VND4_col
0.878 0.754
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra007996.1-P NAC/NAM 10 137

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo2g075130 Brassica oleracea Bo2g075130 I 0.968
cassava25360.m1 Manihot esculenta cassava25360.m1 I 0.956
Pm022184 Prunus mume Pm022184 I 0.955
MDP0000849944 Malus domestica MDP0000849944 I 0.955
PRUPE_ppa016236mg Prunus persica PRUPE_ppa016236mg I 0.954
SapurV1A.0179s0040 Salix purpurea SapurV1A.0179s0040 I 0.954
Ciclev10003255m.g Citrus clementina Ciclev10003255m.g I 0.953
evm.TU.contig_30558 Carica papaya evm.TU.contig_30558 I 0.953
orange1.1g019821m.g Citrus sinensis orange1.1g019821m.g I 0.953
29728.m000815 Ricinus communis 29728.m000815 I 0.952
POPTR_0013s11740 Populus trichocarpa POPTR_0013s11740 I 0.952
Bra016098 Brassica rapa Bra016098 I 0.951
Carubv10020645m.g Capsella rubella Carubv10020645m.g I 0.951
NAC030 Arabidopsis thaliana AT1G71930 D 0.951
MDP0000902822 Malus domestica MDP0000902822 I 0.951
Thhalv10018853m.g Eutrema salsugineum Thhalv10018853m.g I 0.951
Cagra.4006s0034 Capsella grandiflora Cagra.4006s0034 I 0.951
Bostr.10273s0160 Boechera stricta Bostr.10273s0160 I 0.951
TCM_036364 Theobroma cacao TCM_036364 I 0.950
PGSC0003DMG400026079 Solanum tuberosum PGSC0003DMG400026079 I 0.948
Solyc06g065410.2 Solanum lycopersicum Solyc06g065410.2 I 0.948
Cla016604 Citrullus lanatus Cla016604 I 0.947
Lus10017915.g Linum usitatissimum Lus10017915.g I 0.946
mgf009391m Mimulus guttatus mgf009391m I 0.946
Bo6g114440 Brassica oleracea Bo6g114440 I 0.945
cassava40790.m1 Manihot esculenta cassava40790.m1 I 0.943
Cucsa.240650 Cucumis sativus Cucsa.240650 I 0.943
Solyc11g018660.1 Solanum lycopersicum Solyc11g018660.1 I 0.941
VND7 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2001196 I 0.940
PDK_20s1503311g001 Phoenix dactylifera PDK_20s1503311g001 I 0.925
PK11173.1 Cannabis sativa PK11173.1 I 0.923
Thhalv10022756m.g Eutrema salsugineum Thhalv10022756m.g I 0.923
VND1 Arabidopsis lyrata Al_scaffold_0003_3772 I 0.923
GLYMA20G31551 Glycine max GLYMA20G31551 I 0.923
orange1.1g021187m.g Citrus sinensis orange1.1g021187m.g I 0.922
Gorai.008G063600 Gossypium raimondii Gorai.008G063600 I 0.922
ANAC076 Vitis vinifera VIT_04s0023g03110 I 0.922
POPTR_0005s11870 Populus trichocarpa POPTR_0005s11870 I 0.922
cassava24947.valid.m1 Manihot esculenta cassava24947.valid.m1 I 0.922
SapurV1A.0487s0230 Salix purpurea SapurV1A.0487s0230 I 0.922
Ciclev10026114m.g Citrus clementina Ciclev10026114m.g I 0.922
evm.TU.supercontig_6.226 Carica papaya evm.TU.supercontig_6.226 I 0.922
TCM_000235 Theobroma cacao TCM_000235 I 0.922
Bo7g011640 Brassica oleracea Bo7g011640 I 0.921
28623.m000400 Ricinus communis 28623.m000400 I 0.921
cassava26615.m1 Manihot esculenta cassava26615.m1 I 0.921
Solyc02g084350.2 Solanum lycopersicum Solyc02g084350.2 I 0.920
Gorai.007G196400 Gossypium raimondii Gorai.007G196400 I 0.920
NAC037 Arabidopsis thaliana AT2G18060 D 0.920
PDK_20s1306451g001 Phoenix dactylifera PDK_20s1306451g001 I 0.920
PGSC0003DMG401003552 Solanum tuberosum PGSC0003DMG401003552 I 0.920
Aquca_006_00155 Aquilegia coerulea Aquca_006_00155 I 0.920
MTR_1g096430 Medicago truncatula MTR_1g096430 I 0.919
PGSC0003DMG400000887 Solanum tuberosum PGSC0003DMG400000887 I 0.919
Eucgr.I02366 Eucalyptus grandis Eucgr.I02366 I 0.919
Gorai.003G010700 Gossypium raimondii Gorai.003G010700 I 0.919
Eucgr.F02615 Eucalyptus grandis Eucgr.F02615 I 0.919
POPTR_0019s11330 Populus trichocarpa POPTR_0019s11330 I 0.918
GSMUA_Achr8G12100_001 Musa acuminata GSMUA_Achr8G12100_001 I 0.917
GSMUA_Achr11G03040_001 Musa acuminata GSMUA_Achr11G03040_001 I 0.917
Bo3g093950 Brassica oleracea Bo3g093950 I 0.917
mgf022574m Mimulus guttatus mgf022574m I 0.917
Cucsa.043420 Cucumis sativus Cucsa.043420 I 0.916
Ca_04309 Cicer arietinum Ca_04309 I 0.915
SapurV1A.2633s0010 Salix purpurea SapurV1A.2633s0010 I 0.915
SapurV1A.0287s0290 Salix purpurea SapurV1A.0287s0290 I 0.915
SapurV1A.1801s0020 Salix purpurea SapurV1A.1801s0020 I 0.915
SapurV1A.0287s0280 Salix purpurea SapurV1A.0287s0280 I 0.915
Lus10028372.g Linum usitatissimum Lus10028372.g I 0.914
Lus10041822.g Linum usitatissimum Lus10041822.g I 0.914
ANAC076 Arabidopsis lyrata fgenesh2_kg.7__450__AT4G36160.1 I 0.913
Bra017750 Brassica rapa Bra017750 I 0.913
Bo7g117820 Brassica oleracea Bo7g117820 I 0.913
Carubv10004997m.g Capsella rubella Carubv10004997m.g I 0.913
Cagra.4734s0006 Capsella grandiflora Cagra.4734s0006 I 0.913
Bostr.18351s0273 Boechera stricta Bostr.18351s0273 I 0.912
VND7 Vitis vinifera VIT_18s0072g01060 I 0.911
Thhalv10025510m.g Eutrema salsugineum Thhalv10025510m.g I 0.910
Bo1g005810 Brassica oleracea Bo1g005810 I 0.909
Bra011667 Brassica rapa Bra011667 I 0.909
SapurV1A.0166s0460 Salix purpurea SapurV1A.0166s0460 I 0.908
MDP0000176447 Malus domestica MDP0000176447 I 0.908
GLYMA10G36050 Glycine max GLYMA10G36050 I 0.908
MDP0000298965 Malus domestica MDP0000298965 I 0.908
Si036363m.g Setaria italica Si036363m.g I 0.908
PRUPE_ppa022264mg Prunus persica PRUPE_ppa022264mg I 0.908
Pavir.Ib00161 Panicum virgatum Pavir.Ib00161 I 0.908
LjSGA_075859.1 Lotus japonicus LjSGA_075859.1 I 0.908
MDP0000136180 Malus domestica MDP0000136180 I 0.908
MDP0000299959 Malus domestica MDP0000299959 I 0.908
SapurV1A.3982s0010 Salix purpurea SapurV1A.3982s0010 I 0.908
Pm026735 Prunus mume Pm026735 I 0.908
Sb01g048730 Sorghum bicolor Sb01g048730 I 0.908
gene14869-v1.0-hybrid Fragaria vesca gene14869-v1.0-hybrid I 0.907
mgf026153m Mimulus guttatus mgf026153m I 0.906
Bostr.7867s1483 Boechera stricta Bostr.7867s1483 I 0.905
LPERR03G01990 Leersia perrieri LPERR03G01990 I 0.905
OB03G12100 Oryza brachyantha OB03G12100 I 0.905
ORUFI03G01920 Oryza rufipogon ORUFI03G01920 I 0.905
ORGLA03G0019500 Oryza glaberrima ORGLA03G0019500 I 0.905
OPUNC03G01920 Oryza punctata OPUNC03G01920 I 0.905
ONIVA03G01790 Oryza nivara ONIVA03G01790 I 0.905
BGIOSGA011539 Oryza indica BGIOSGA011539 I 0.905
OGLUM03G02130 Oryza glumaepatula OGLUM03G02130 I 0.905
ANAC076 Arabidopsis thaliana AT4G36160 D 0.905
OLONG_011521 Oryza longistaminata OLONG_011521 I 0.905
OBART03G02180 Oryza barthii OBART03G02180 I 0.905
OMERI03G02020 Oryza meridionalis OMERI03G02020 I 0.905
Pavir.J32898 Panicum virgatum Pavir.J32898 I 0.905
Traes_4BL_03B8EA3BF Triticum aestivum Traes_4BL_03B8EA3BF I 0.904
Traes_4DL_54E14ABCB Triticum aestivum Traes_4DL_54E14ABCB I 0.904
Cla014492 Citrullus lanatus Cla014492 I 0.904
F775_20020 Aegilops tauschii F775_20020 I 0.904
OS10G0532000 Oryza sativa OS10G0532000 I 0.903
OB10G23740 Oryza brachyantha OB10G23740 I 0.903
BGIOSGA033343 Oryza indica BGIOSGA033343 I 0.903
MLOC_56769 Hordeum vulgare MLOC_56769 I 0.902
AMTR_s00017p00119990 Amborella trichopoda AMTR_s00017p00119990 I 0.901
Bra039915 Brassica rapa Bra039915 I 0.900
GRMZM2G025642 Zea mays GRMZM2G025642 I 0.900
Sb01g030760 Sorghum bicolor Sb01g030760 I 0.898
OBART10G16620 Oryza barthii OBART10G16620 I 0.898
ONIVA10G18400 Oryza nivara ONIVA10G18400 I 0.898
ORUFI10G17730 Oryza rufipogon ORUFI10G17730 I 0.898
OGLUM10G16690 Oryza glumaepatula OGLUM10G16690 I 0.898
Aquca_007_00369 Aquilegia coerulea Aquca_007_00369 I 0.897
Si039467m.g Setaria italica Si039467m.g I 0.895
Pavir.Ib02477 Panicum virgatum Pavir.Ib02477 I 0.894
Pavir.Ia02924 Panicum virgatum Pavir.Ia02924 I 0.894
OLONG_016152 Oryza longistaminata OLONG_016152 I 0.894
OMERI10G13220 Oryza meridionalis OMERI10G13220 I 0.894
MTR_5g021710 Medicago truncatula MTR_5g021710 I 0.890
Ca_01981 Cicer arietinum Ca_01981 I 0.886
PK23416.1 Cannabis sativa PK23416.1 I 0.886
Lus10024601.g Linum usitatissimum Lus10024601.g I 0.886
SapurV1A.0634s0120 Salix purpurea SapurV1A.0634s0120 I 0.886
GLYMA11G07990 Glycine max GLYMA11G07990 I 0.885
AMTR_s00011p00251570 Amborella trichopoda AMTR_s00011p00251570 I 0.885
GLYMA01G37310 Glycine max GLYMA01G37310 I 0.885
Aquca_023_00039 Aquilegia coerulea Aquca_023_00039 I 0.884
Aquca_013_00692 Aquilegia coerulea Aquca_013_00692 I 0.884
cassava46384.m1 Manihot esculenta cassava46384.m1 I 0.884
SapurV1A.1275s0070 Salix purpurea SapurV1A.1275s0070 I 0.882
VIT_02s0154g00020 Vitis vinifera VIT_02s0154g00020 I 0.882
28200.m000189 Ricinus communis 28200.m000189 I 0.882
orange1.1g020354m.g Citrus sinensis orange1.1g020354m.g I 0.882
TCM_016035 Theobroma cacao TCM_016035 I 0.882
evm.TU.supercontig_29.118 Carica papaya evm.TU.supercontig_29.118 I 0.882
POPTR_0003s11250 Populus trichocarpa POPTR_0003s11250 I 0.882
POPTR_0001s00220 Populus trichocarpa POPTR_0001s00220 I 0.882
Ciclev10024218m.g Citrus clementina Ciclev10024218m.g I 0.882
mgf020336m Mimulus guttatus mgf020336m I 0.879
MDP0000320566 Malus domestica MDP0000320566 I 0.879
Cucsa.302120 Cucumis sativus Cucsa.302120 I 0.878
Thhalv10007823m.g Eutrema salsugineum Thhalv10007823m.g I 0.878
VND4 Arabidopsis lyrata fgenesh2_kg.1__1330__AT1G12260.1 I 0.878
Bo8g062650 Brassica oleracea Bo8g062650 I 0.878
Bra016783 Brassica rapa Bra016783 I 0.878
NAC007 Arabidopsis thaliana AT1G12260 D 0.878
Cagra.0568s0135 Capsella grandiflora Cagra.0568s0135 I 0.878
Carubv10009366m.g Capsella rubella Carubv10009366m.g I 0.878
Bostr.13671s0233 Boechera stricta Bostr.13671s0233 I 0.878
Solyc06g034340.1 Solanum lycopersicum Solyc06g034340.1 I 0.877
PGSC0003DMG400021576 Solanum tuberosum PGSC0003DMG400021576 I 0.877
Gorai.013G140700 Gossypium raimondii Gorai.013G140700 I 0.877
TCM_014939 Theobroma cacao TCM_014939 I 0.876
Eucgr.A02887 Eucalyptus grandis Eucgr.A02887 I 0.876
Gorai.001G048200 Gossypium raimondii Gorai.001G048200 I 0.876
Ciclev10006988m.g Citrus clementina Ciclev10006988m.g I 0.876
Cla006372 Citrullus lanatus Cla006372 I 0.875
Cucsa.251620 Cucumis sativus Cucsa.251620 I 0.875
GLYMA09G36600 Glycine max GLYMA09G36600 I 0.874
Bo5g017120 Brassica oleracea Bo5g017120 I 0.874
orange1.1g018596m.g Citrus sinensis orange1.1g018596m.g I 0.873
evm.TU.supercontig_3.311 Carica papaya evm.TU.supercontig_3.311 I 0.873
mgf021916m Mimulus guttatus mgf021916m I 0.873
Bostr.0568s0042 Boechera stricta Bostr.0568s0042 I 0.872
Cagra.10427s0040 Capsella grandiflora Cagra.10427s0040 I 0.872
Carubv10026898m.g Capsella rubella Carubv10026898m.g I 0.872
Gorai.003G114100 Gossypium raimondii Gorai.003G114100 I 0.872
ANAC105 Arabidopsis lyrata fgenesh2_kg.8__2792__AT5G66300.1 I 0.872
Bra019750 Brassica rapa Bra019750 I 0.872
GLYMA06G47680 Glycine max GLYMA06G47680 I 0.871
Bra012065 Brassica rapa Bra012065 I 0.871
VIT_16s0022g00690 Vitis vinifera VIT_16s0022g00690 I 0.871
30147.m014211 Ricinus communis 30147.m014211 I 0.871
Bo7g065010 Brassica oleracea Bo7g065010 I 0.871
Pm019490 Prunus mume Pm019490 I 0.871
Pm019488 Prunus mume Pm019488 I 0.871
PRUPE_ppa020139mg Prunus persica PRUPE_ppa020139mg I 0.871