CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bra010183
(
Brassica rapa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bra010183
T292567_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC012
M00971_2.00
Arabidopsis thaliana
NYAMGYHANN
NNTDRCKTRN
PBM
Lindemose et al.(2014)
SND1
0.955
0.974
MDP0000762302
M02383_2.00
Malus domestica
NNNAMKHNWN
NWNDMKTNNN
PBM
Weirauch et al.(2014)
pTH9205
0.938
0.912
NAC043
M02370_2.00
Arabidopsis thaliana
NTTACGYWAN
NTWRCGTAAN
PBM
Weirauch et al.(2014)
pTH8161
0.921
0.895
NAC043
M07192_2.00
Arabidopsis thaliana
TRCKTVHDNHNYAMG
CKTRNDNHDBAMGYA
Dap-seq
OMalley et al.(2016)
NST1_colamp_a
0.921
0.895
NAC043
M07193_2.00
Arabidopsis thaliana
RCKTVHDNHNYAMGYWA
TWRCKTRNDNHDBAMGY
Dap-seq
OMalley et al.(2016)
NST1_col_v31
0.921
0.895
SMB
M07184_2.00
Arabidopsis thaliana
TWNCKTVHDNHNYAMGYWAYH
DRTWRCKTRNDNHDBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_col_a
0.888
0.798
SMB
M07185_2.00
Arabidopsis thaliana
TWNCKTVNNNNNYAMG
CKTRNNNNNBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_colamp_a
0.888
0.798
OS06G0131700
M02378_2.00
Oryza sativa
NNNNHMDNND
HNNHKDNNNN
PBM
Weirauch et al.(2014)
pTH8356
0.888
0.868
BRN2
M07217_2.00
Arabidopsis thaliana
CKTVHDNNNYAMGYWA
TWRCKTRNNNHDBAMG
Dap-seq
OMalley et al.(2016)
ANAC070_colamp_a
0.871
0.789
BRN2
M07218_2.00
Arabidopsis thaliana
TWDCKTVHDNHDYAMGYWAHH
DDTWRCKTRHDNHDBAMGHWA
Dap-seq
OMalley et al.(2016)
ANAC070_col
0.871
0.789
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra010183.1-P
NAC/NAM
17
144
PPGFRFHPTEEELLHYYLRKKVHSQKIDLDVIREVDLNKLEPWDIQEECRIGLTPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKIIYSCVRRIGLRKTLVFYKGRAPHGEKSDWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Brassica rapa
TFs
237 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo5g086900
Brassica oleracea
Bo5g086900
I
0.966
Thhalv10009336m.g
Eutrema salsugineum
Thhalv10009336m.g
I
0.955
Cagra.14513s0001
Capsella grandiflora
Cagra.14513s0001
I
0.955
ANAC012
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002619
I
0.955
Carubv10011900m.g
Capsella rubella
Carubv10011900m.g
I
0.955
NAC012
Arabidopsis thaliana
AT1G32770
D
0.955
Bo5g049360
Brassica oleracea
Bo5g049360
I
0.954
Bostr.3359s0081
Boechera stricta
Bostr.3359s0081
I
0.954
Bra023288
Brassica rapa
Bra023288
I
0.953
Gorai.004G129200
Gossypium raimondii
Gorai.004G129200
I
0.944
TCM_015621
Theobroma cacao
TCM_015621
I
0.944
orange1.1g014260m.g
Citrus sinensis
orange1.1g014260m.g
I
0.944
gene01881-v1.0-hybrid
Fragaria vesca
gene01881-v1.0-hybrid
I
0.944
Ciclev10021141m.g
Citrus clementina
Ciclev10021141m.g
I
0.944
30068.m002591
Ricinus communis
30068.m002591
I
0.944
cassava42638.valid.m1
Manihot esculenta
cassava42638.valid.m1
I
0.944
PRUPE_ppa006801mg
Prunus persica
PRUPE_ppa006801mg
I
0.944
Pm024260
Prunus mume
Pm024260
I
0.944
Lus10001664.g
Linum usitatissimum
Lus10001664.g
I
0.943
Lus10017340.g
Linum usitatissimum
Lus10017340.g
I
0.943
Gorai.008G130300
Gossypium raimondii
Gorai.008G130300
I
0.942
cassava32649.m1
Manihot esculenta
cassava32649.m1
I
0.941
Gorai.003G077700
Gossypium raimondii
Gorai.003G077700
I
0.941
Gorai.006G205300
Gossypium raimondii
Gorai.006G205300
I
0.941
cassava45846.m1
Manihot esculenta
cassava45846.m1
I
0.941
Lus10033239.g
Linum usitatissimum
Lus10033239.g
I
0.940
Gorai.008G259700
Gossypium raimondii
Gorai.008G259700
I
0.940
Lus10008271.g
Linum usitatissimum
Lus10008271.g
I
0.940
Eucgr.E01053
Eucalyptus grandis
Eucgr.E01053
I
0.938
MDP0000140229
Malus domestica
MDP0000140229
I
0.938
SapurV1A.0131s0060
Salix purpurea
SapurV1A.0131s0060
I
0.938
PK22182.1
Cannabis sativa
PK22182.1
I
0.938
MDP0000762302
Malus domestica
MDP0000762302
D
0.938
POPTR_0011s15640
Populus trichocarpa
POPTR_0011s15640
I
0.938
SapurV1A.2717s0010
Salix purpurea
SapurV1A.2717s0010
I
0.937
SapurV1A.0941s0070
Salix purpurea
SapurV1A.0941s0070
I
0.937
POPTR_0001s45250
Populus trichocarpa
POPTR_0001s45250
I
0.937
evm.TU.supercontig_37.89
Carica papaya
evm.TU.supercontig_37.89
I
0.935
Solyc10g005010.2
Solanum lycopersicum
Solyc10g005010.2
I
0.934
PGSC0003DMG400011268
Solanum tuberosum
PGSC0003DMG400011268
I
0.934
PRUPE_ppa020746mg
Prunus persica
PRUPE_ppa020746mg
I
0.930
Pm018292
Prunus mume
Pm018292
I
0.930
gene18636-v1.0-hybrid
Fragaria vesca
gene18636-v1.0-hybrid
I
0.930
MDP0000563165
Malus domestica
MDP0000563165
I
0.930
gene18635-v1.0-hybrid
Fragaria vesca
gene18635-v1.0-hybrid
I
0.925
Lus10030205.g
Linum usitatissimum
Lus10030205.g
I
0.924
27964.m000369
Ricinus communis
27964.m000369
I
0.924
mgf022455m
Mimulus guttatus
mgf022455m
I
0.923
TCM_005047
Theobroma cacao
TCM_005047
I
0.923
Gorai.007G112500
Gossypium raimondii
Gorai.007G112500
I
0.923
cassava33021.m1
Manihot esculenta
cassava33021.m1
I
0.923
orange1.1g015853m.g
Citrus sinensis
orange1.1g015853m.g
I
0.922
Ciclev10024035m.g
Citrus clementina
Ciclev10024035m.g
I
0.922
Cucsa.120870
Cucumis sativus
Cucsa.120870
I
0.921
Bo4g006990
Brassica oleracea
Bo4g006990
I
0.921
Thhalv10001506m.g
Eutrema salsugineum
Thhalv10001506m.g
I
0.921
Carubv10023503m.g
Capsella rubella
Carubv10023503m.g
I
0.921
Bostr.25993s0090
Boechera stricta
Bostr.25993s0090
I
0.921
Cagra.0050s0024
Capsella grandiflora
Cagra.0050s0024
I
0.921
Cucsa.193460
Cucumis sativus
Cucsa.193460
I
0.921
NAC043
Arabidopsis thaliana
AT2G46770
D
0.921
Bra004509
Brassica rapa
Bra004509
I
0.921
Cla011508
Citrullus lanatus
Cla011508
I
0.921
NST1
Arabidopsis lyrata
scaffold_403649.1
I
0.921
Cla006806
Citrullus lanatus
Cla006806
I
0.921
Lus10002687.g
Linum usitatissimum
Lus10002687.g
I
0.921
GSMUA_Achr7G05980_001
Musa acuminata
GSMUA_Achr7G05980_001
I
0.920
Bo4g197330
Brassica oleracea
Bo4g197330
I
0.920
Bra040486
Brassica rapa
Bra040486
I
0.920
ANAC012
Vitis vinifera
VIT_02s0025g02710
I
0.920
Gorai.001G150800
Gossypium raimondii
Gorai.001G150800
I
0.919
Aquca_037_00272
Aquilegia coerulea
Aquca_037_00272
I
0.917
MTR_8g024480
Medicago truncatula
MTR_8g024480
I
0.916
Ca_22426
Cicer arietinum
Ca_22426
I
0.916
GLYMA07G05660
Glycine max
GLYMA07G05660
I
0.916
GLYMA16G02200
Glycine max
GLYMA16G02200
I
0.916
AMTR_s00113p00077540
Amborella trichopoda
AMTR_s00113p00077540
I
0.916
GSMUA_Achr3G12230_001
Musa acuminata
GSMUA_Achr3G12230_001
I
0.916
LjSGA_027787.1
Lotus japonicus
LjSGA_027787.1
I
0.916
Ca_22425
Cicer arietinum
Ca_22425
I
0.915
POPTR_0014s10060
Populus trichocarpa
POPTR_0014s10060
I
0.915
SapurV1A.0162s0220
Salix purpurea
SapurV1A.0162s0220
I
0.915
VIT_15s0048g02660
Vitis vinifera
VIT_15s0048g02660
I
0.912
GSMUA_Achr9G24450_001
Musa acuminata
GSMUA_Achr9G24450_001
I
0.912
PK04961.1
Cannabis sativa
PK04961.1
I
0.912
POPTR_0002s17950
Populus trichocarpa
POPTR_0002s17950
I
0.910
PDK_20s1408241g001
Phoenix dactylifera
PDK_20s1408241g001
I
0.909
GRMZM2G171395
Zea mays
GRMZM2G171395
I
0.906
Sb10g002120
Sorghum bicolor
Sb10g002120
I
0.906
GRMZM2G069047
Zea mays
GRMZM2G069047
I
0.906
Si006565m.g
Setaria italica
Si006565m.g
I
0.906
GSMUA_AchrUn_randomG21980_001
Musa acuminata
GSMUA_AchrUn_randomG21980_001
I
0.905
Pavir.J20698
Panicum virgatum
Pavir.J20698
I
0.902
Pavir.J21162
Panicum virgatum
Pavir.J21162
I
0.902
GRMZM2G092465
Zea mays
GRMZM2G092465
I
0.902
Sb07g001550
Sorghum bicolor
Sb07g001550
I
0.902
GRMZM2G104074
Zea mays
GRMZM2G104074
I
0.900
Sb10g020860
Sorghum bicolor
Sb10g020860
I
0.900
GRMZM2G041746
Zea mays
GRMZM2G041746
I
0.900
Cagra.0483s0052
Capsella grandiflora
Cagra.0483s0052
I
0.898
Carubv10019223m.g
Capsella rubella
Carubv10019223m.g
I
0.898
BRADI1G38730
Brachypodium distachyon
BRADI1G38730
I
0.897
F775_11081
Aegilops tauschii
F775_11081
I
0.897
Traes_7DL_1AD9A3E8D
Triticum aestivum
Traes_7DL_1AD9A3E8D
I
0.897
MLOC_66924
Hordeum vulgare
MLOC_66924
I
0.897
Traes_7AL_B000BC0DD
Triticum aestivum
Traes_7AL_B000BC0DD
I
0.897
Traes_7DL_AD6EAD1A61
Triticum aestivum
Traes_7DL_AD6EAD1A61
I
0.896
Traes_7DL_AD6EAD1A6
Triticum aestivum
Traes_7DL_AD6EAD1A6
I
0.896
MLOC_17128
Hordeum vulgare
MLOC_17128
I
0.896
F775_42361
Aegilops tauschii
F775_42361
I
0.896
Traes_7AL_46F73E667
Triticum aestivum
Traes_7AL_46F73E667
I
0.896
TRIUR3_14210
Triticum urartu
TRIUR3_14210
I
0.896
Si007822m.g
Setaria italica
Si007822m.g
I
0.895
OB02G19660
Oryza brachyantha
OB02G19660
I
0.895
Pavir.Da01009
Panicum virgatum
Pavir.Da01009
I
0.895
Pavir.J05053
Panicum virgatum
Pavir.J05053
I
0.895
Sb04g009180
Sorghum bicolor
Sb04g009180
I
0.895
BRADI3G09520
Brachypodium distachyon
BRADI3G09520
I
0.895
LPERR02G09170
Leersia perrieri
LPERR02G09170
I
0.894
Bra007640
Brassica rapa
Bra007640
I
0.893
Bra003478
Brassica rapa
Bra003478
I
0.893
Bostr.13158s0196
Boechera stricta
Bostr.13158s0196
I
0.893
Pavir.Ab01037
Panicum virgatum
Pavir.Ab01037
I
0.892
Pavir.Aa02770
Panicum virgatum
Pavir.Aa02770
I
0.892
Lus10030143.g
Linum usitatissimum
Lus10030143.g
I
0.891
Lus10009939.g
Linum usitatissimum
Lus10009939.g
I
0.891
Eucgr.D01671
Eucalyptus grandis
Eucgr.D01671
I
0.891
Si017641m.g
Setaria italica
Si017641m.g
I
0.891
Bo6g123980
Brassica oleracea
Bo6g123980
I
0.890
Bra035127
Brassica rapa
Bra035127
I
0.890
ORUFI08G01170
Oryza rufipogon
ORUFI08G01170
I
0.889
29725.m000235
Ricinus communis
29725.m000235
I
0.889
OBART08G01110
Oryza barthii
OBART08G01110
I
0.889
OPUNC08G01110
Oryza punctata
OPUNC08G01110
I
0.889
PRUPE_ppa025341mg
Prunus persica
PRUPE_ppa025341mg
I
0.889
Pm010886
Prunus mume
Pm010886
I
0.889
ORGLA08G0004900
Oryza glaberrima
ORGLA08G0004900
I
0.889
Ca_13929
Cicer arietinum
Ca_13929
I
0.889
OS08G0115800
Oryza sativa
OS08G0115800
I
0.889
PK10271.1
Cannabis sativa
PK10271.1
I
0.889
OGLUM08G01180
Oryza glumaepatula
OGLUM08G01180
I
0.889
gene19898-v1.0-hybrid
Fragaria vesca
gene19898-v1.0-hybrid
I
0.889
OB08G11290
Oryza brachyantha
OB08G11290
I
0.889
BGIOSGA027883
Oryza indica
BGIOSGA027883
I
0.889
ONIVA08G01130
Oryza nivara
ONIVA08G01130
I
0.889
ORUFI06G01950
Oryza rufipogon
ORUFI06G01950
I
0.888
OB06G11970
Oryza brachyantha
OB06G11970
I
0.888
OBART06G01950
Oryza barthii
OBART06G01950
I
0.888
Bostr.20129s0396
Boechera stricta
Bostr.20129s0396
I
0.888
OMERI06G01850
Oryza meridionalis
OMERI06G01850
I
0.888
Carubv10020504m.g
Capsella rubella
Carubv10020504m.g
I
0.888
Cagra.1725s0032
Capsella grandiflora
Cagra.1725s0032
I
0.888
ONIVA06G02290
Oryza nivara
ONIVA06G02290
I
0.888
OPUNC06G01800
Oryza punctata
OPUNC06G01800
I
0.888
OGLUM06G01950
Oryza glumaepatula
OGLUM06G01950
I
0.888
ORGLA06G0019800
Oryza glaberrima
ORGLA06G0019800
I
0.888
OS06G0131700
Oryza sativa
OS06G0131700
D
0.888
Thhalv10019534m.g
Eutrema salsugineum
Thhalv10019534m.g
I
0.888
SMB
Arabidopsis lyrata
scaffold_202942.1
I
0.888
Bo6g080930
Brassica oleracea
Bo6g080930
I
0.888
BGIOSGA022006
Oryza indica
BGIOSGA022006
I
0.888
GRMZM2G155816
Zea mays
GRMZM2G155816
I
0.888
LPERR06G01790
Leersia perrieri
LPERR06G01790
I
0.888
SMB
Arabidopsis thaliana
AT1G79580
D
0.888
Pavir.J07835
Panicum virgatum
Pavir.J07835
I
0.887
NST2
Arabidopsis lyrata
scaffold_503455.1
I
0.886
LPERR08G01440
Leersia perrieri
LPERR08G01440
I
0.886
SMB
Vitis vinifera
VIT_19s0085g01210
I
0.885
AMTR_s00099p00131560
Amborella trichopoda
AMTR_s00099p00131560
I
0.885
OMERI08G01360
Oryza meridionalis
OMERI08G01360
I
0.885
LjSGA_059487.1
Lotus japonicus
LjSGA_059487.1
I
0.884
SapurV1A.0003s0530
Salix purpurea
SapurV1A.0003s0530
I
0.884
MTR_2g062730
Medicago truncatula
MTR_2g062730
I
0.884
Bo2g095440
Brassica oleracea
Bo2g095440
I
0.884
cassava32687.m1
Manihot esculenta
cassava32687.m1
I
0.884
GLYMA08G17140
Glycine max
GLYMA08G17140
I
0.884
MTR_4g035590
Medicago truncatula
MTR_4g035590
I
0.883
evm.TU.supercontig_118.26
Carica papaya
evm.TU.supercontig_118.26
I
0.883
TCM_036034
Theobroma cacao
TCM_036034
I
0.883
Ca_15792
Cicer arietinum
Ca_15792
I
0.883
GLYMA09G36820
Glycine max
GLYMA09G36820
I
0.882
Solyc12g017400.1
Solanum lycopersicum
Solyc12g017400.1
I
0.882
PGSC0003DMG400009665
Solanum tuberosum
PGSC0003DMG400009665
I
0.882
OBART04G13830
Oryza barthii
OBART04G13830
I
0.881
Cla005561
Citrullus lanatus
Cla005561
I
0.881
ONIVA04G12040
Oryza nivara
ONIVA04G12040
I
0.881
Cucsa.240210
Cucumis sativus
Cucsa.240210
I
0.881
OLONG_020428
Oryza longistaminata
OLONG_020428
I
0.881
GRMZM2G099144
Zea mays
GRMZM2G099144
I
0.881
BGIOSGA034998
Oryza indica
BGIOSGA034998
I
0.881
TCM_033728
Theobroma cacao
TCM_033728
I
0.881
BGIOSGA015018
Oryza indica
BGIOSGA015018
I
0.881
MDP0000501518
Malus domestica
MDP0000501518
I
0.880
SapurV1A.0093s0460
Salix purpurea
SapurV1A.0093s0460
I
0.880
SapurV1A.0164s0070
Salix purpurea
SapurV1A.0164s0070
I
0.880
cassava39971.m1
Manihot esculenta
cassava39971.m1
I
0.880
POPTR_0010s18420
Populus trichocarpa
POPTR_0010s18420
I
0.880
POPTR_0008s07950
Populus trichocarpa
POPTR_0008s07950
I
0.880
MDP0000652584
Malus domestica
MDP0000652584
I
0.880
OPUNC02G09610
Oryza punctata
OPUNC02G09610
I
0.880
Gorai.004G268500
Gossypium raimondii
Gorai.004G268500
I
0.880
Pavir.Gb01599
Panicum virgatum
Pavir.Gb01599
I
0.879
Bra008423
Brassica rapa
Bra008423
I
0.879
Bra003602
Brassica rapa
Bra003602
I
0.879
Pavir.J07268
Panicum virgatum
Pavir.J07268
I
0.879
OGLUM04G13590
Oryza glumaepatula
OGLUM04G13590
I
0.879
Sb06g017720
Sorghum bicolor
Sb06g017720
I
0.879
Si012319m.g
Setaria italica
Si012319m.g
I
0.879
BRADI3G13727
Brachypodium distachyon
BRADI3G13727
I
0.879
OB04G21050
Oryza brachyantha
OB04G21050
I
0.879
GLYMA15G42050
Glycine max
GLYMA15G42050
I
0.878
ORUFI04G15090
Oryza rufipogon
ORUFI04G15090
I
0.877
MLOC_19175
Hordeum vulgare
MLOC_19175
I
0.876
OS02G0252200
Oryza sativa
OS02G0252200
I
0.876
Traes_2DL_70F83D4B9
Triticum aestivum
Traes_2DL_70F83D4B9
I
0.876
ORUFI02G10740
Oryza rufipogon
ORUFI02G10740
I
0.876
F775_23174
Aegilops tauschii
F775_23174
I
0.876
BRADI5G11247
Brachypodium distachyon
BRADI5G11247
I
0.876
Traes_2AL_F0B17F0EA
Triticum aestivum
Traes_2AL_F0B17F0EA
I
0.876
Traes_2BL_209C14A8F
Triticum aestivum
Traes_2BL_209C14A8F
I
0.876
GRMZM2G435824
Zea mays
GRMZM2G435824
I
0.875
mgf025569m
Mimulus guttatus
mgf025569m
I
0.874
TRIUR3_28259
Triticum urartu
TRIUR3_28259
I
0.874
OLONG_007664
Oryza longistaminata
OLONG_007664
I
0.873
BGIOSGA007898
Oryza indica
BGIOSGA007898
I
0.873
Cla012576
Citrullus lanatus
Cla012576
I
0.873
Cucsa.237820
Cucumis sativus
Cucsa.237820
I
0.873
ONIVA02G12010
Oryza nivara
ONIVA02G12010
I
0.873
OBART02G10820
Oryza barthii
OBART02G10820
I
0.873
ORGLA02G0097800
Oryza glaberrima
ORGLA02G0097800
I
0.873
OGLUM02G10770
Oryza glumaepatula
OGLUM02G10770
I
0.873
Bra037914
Brassica rapa
Bra037914
I
0.871
BRN2
Arabidopsis thaliana
AT4G10350
D
0.871
Bo9g088300
Brassica oleracea
Bo9g088300
I
0.871
Thhalv10029403m.g
Eutrema salsugineum
Thhalv10029403m.g
I
0.871
ANAC070
Arabidopsis lyrata
Al_scaffold_0006_3164
I
0.871
mg017416m
Mimulus guttatus
mg017416m
I
0.871