CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra027596
(
Brassica rapa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bra027596
T292636_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.960
0.616
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra027596.1-P
NAC/NAM
5
129
RVGYRFSPTDEELIKFYLKNKILGNEWLVTDAISEINIFSYEPQFLPALSKIKSNDLVWYFFSPKESTKKATRRVTRSGFWKKTGRSMNINNKGGNCGEIGLKMTLVYIDDKVRKSDWLMYEYHI
Links
Other
NAC/NAM
family TFs
Other
Brassica rapa
TFs
111 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.25375s0002
Boechera stricta
Bostr.25375s0002
I
0.976
Bra036328
Brassica rapa
Bra036328
I
0.969
Bo9g004070
Brassica oleracea
Bo9g004070
I
0.968
Bostr.4825s0023
Boechera stricta
Bostr.4825s0023
I
0.965
NAC69
Arabidopsis thaliana
AT4G01550
D
0.960
anac069
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002854
I
0.960
Carubv10003260m.g
Capsella rubella
Carubv10003260m.g
I
0.956
Thhalv10028684m.g
Eutrema salsugineum
Thhalv10028684m.g
I
0.956
Bra008553
Brassica rapa
Bra008553
I
0.953
Bo00853s060
Brassica oleracea
Bo00853s060
I
0.950
fgenesh1_pg.C_scaffold_3000386
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000386
I
0.948
Thhalv10007665m.g
Eutrema salsugineum
Thhalv10007665m.g
I
0.938
Bostr.5325s0009
Boechera stricta
Bostr.5325s0009
I
0.931
Bo6g119080
Brassica oleracea
Bo6g119080
I
0.931
Bo9g004090
Brassica oleracea
Bo9g004090
I
0.931
Ca_20988
Cicer arietinum
Ca_20988
I
0.930
Bo5g002850
Brassica oleracea
Bo5g002850
I
0.930
Bo5g002810
Brassica oleracea
Bo5g002810
I
0.930
PGSC0003DMG400000555
Solanum tuberosum
PGSC0003DMG400000555
I
0.928
Solyc03g080090.2
Solanum lycopersicum
Solyc03g080090.2
I
0.928
Bo9g061230
Brassica oleracea
Bo9g061230
I
0.928
Carubv10009049m.g
Capsella rubella
Carubv10009049m.g
I
0.925
Cagra.1968s0045
Capsella grandiflora
Cagra.1968s0045
I
0.925
Carubv10000489m.g
Capsella rubella
Carubv10000489m.g
I
0.925
GRMZM2G003715
Zea mays
GRMZM2G003715
I
0.919
Bostr.5325s0019
Boechera stricta
Bostr.5325s0019
I
0.916
ANAC001
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1000119
I
0.915
Aquca_009_00966
Aquilegia coerulea
Aquca_009_00966
I
0.915
MDP0000282616
Malus domestica
MDP0000282616
I
0.913
SapurV1A.0003s0330
Salix purpurea
SapurV1A.0003s0330
I
0.911
MTR_8g023840
Medicago truncatula
MTR_8g023840
I
0.911
Bostr.10064s0010
Boechera stricta
Bostr.10064s0010
I
0.911
mgf015836m
Mimulus guttatus
mgf015836m
I
0.910
Bra033296
Brassica rapa
Bra033296
I
0.909
AMTR_s00018p00071850
Amborella trichopoda
AMTR_s00018p00071850
I
0.908
Solyc06g074170.2
Solanum lycopersicum
Solyc06g074170.2
I
0.908
evm.TU.contig_29561
Carica papaya
evm.TU.contig_29561
I
0.905
Eucgr.K02303
Eucalyptus grandis
Eucgr.K02303
I
0.905
BRADI4G37327
Brachypodium distachyon
BRADI4G37327
I
0.905
LPERR09G14720
Leersia perrieri
LPERR09G14720
I
0.904
OGLUM09G19480
Oryza glumaepatula
OGLUM09G19480
I
0.903
BGIOSGA031230
Oryza indica
BGIOSGA031230
I
0.903
ORGLA09G0151800
Oryza glaberrima
ORGLA09G0151800
I
0.903
ONIVA09G20130
Oryza nivara
ONIVA09G20130
I
0.903
OMERI09G14170
Oryza meridionalis
OMERI09G14170
I
0.903
OB09G25590
Oryza brachyantha
OB09G25590
I
0.903
Pm028711
Prunus mume
Pm028711
I
0.903
Sb02g032230
Sorghum bicolor
Sb02g032230
I
0.902
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
0.901
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
0.901
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
0.901
gene08448-v1.0-hybrid
Fragaria vesca
gene08448-v1.0-hybrid
I
0.901
MLOC_37843
Hordeum vulgare
MLOC_37843
I
0.901
PGSC0003DMG400005892
Solanum tuberosum
PGSC0003DMG400005892
I
0.900
Pavir.Ba01386
Panicum virgatum
Pavir.Ba01386
I
0.899
Pavir.Bb02626
Panicum virgatum
Pavir.Bb02626
I
0.899
Solyc11g068750.1
Solanum lycopersicum
Solyc11g068750.1
I
0.899
PGSC0003DMG400019615
Solanum tuberosum
PGSC0003DMG400019615
I
0.899
POPTR_0002s15560
Populus trichocarpa
POPTR_0002s15560
I
0.898
Si032702m.g
Setaria italica
Si032702m.g
I
0.898
SapurV1A.0024s0340
Salix purpurea
SapurV1A.0024s0340
I
0.895
Bo9g004110
Brassica oleracea
Bo9g004110
I
0.895
Carubv10009451m.g
Capsella rubella
Carubv10009451m.g
I
0.895
PRUPE_ppa022384mg
Prunus persica
PRUPE_ppa022384mg
I
0.894
mgf022344m
Mimulus guttatus
mgf022344m
I
0.893
POPTR_0002s18290
Populus trichocarpa
POPTR_0002s18290
I
0.892
SapurV1A.0162s0450
Salix purpurea
SapurV1A.0162s0450
I
0.891
MDP0000575835
Malus domestica
MDP0000575835
I
0.890
PRUPE_ppb017658mg
Prunus persica
PRUPE_ppb017658mg
I
0.890
MTR_8g023860
Medicago truncatula
MTR_8g023860
I
0.890
Pavir.Ia03443
Panicum virgatum
Pavir.Ia03443
I
0.890
GSMUA_Achr4G32010_001
Musa acuminata
GSMUA_Achr4G32010_001
I
0.889
Bra036327
Brassica rapa
Bra036327
I
0.888
POPTR_0002s18320
Populus trichocarpa
POPTR_0002s18320
I
0.888
MTR_8g023880
Medicago truncatula
MTR_8g023880
N
0.887
Bo9g004100
Brassica oleracea
Bo9g004100
I
0.885
Cagra.12529s0001
Capsella grandiflora
Cagra.12529s0001
I
0.885
Gorai.006G203800
Gossypium raimondii
Gorai.006G203800
I
0.884
POPTR_0014s10330
Populus trichocarpa
POPTR_0014s10330
I
0.884
POPTR_0014s10350
Populus trichocarpa
POPTR_0014s10350
I
0.884
F775_13961
Aegilops tauschii
F775_13961
I
0.884
Bo5g002830
Brassica oleracea
Bo5g002830
N
0.884
POPTR_0014s10360
Populus trichocarpa
POPTR_0014s10360
I
0.884
BGIOSGA027623
Oryza indica
BGIOSGA027623
I
0.883
ORUFI08G03870
Oryza rufipogon
ORUFI08G03870
I
0.883
OS08G0157900
Oryza sativa
OS08G0157900
I
0.883
ONIVA08G03440
Oryza nivara
ONIVA08G03440
I
0.883
SapurV1A.0321s0360
Salix purpurea
SapurV1A.0321s0360
I
0.882
SapurV1A.0321s0340
Salix purpurea
SapurV1A.0321s0340
I
0.882
GSMUA_AchrUn_randomG04060_001
Musa acuminata
GSMUA_AchrUn_randomG04060_001
I
0.882
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
0.881
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
0.880
POPTR_0002s18310
Populus trichocarpa
POPTR_0002s18310
I
0.880
POPTR_0014s07210
Populus trichocarpa
POPTR_0014s07210
I
0.879
Cagra.27691s0001
Capsella grandiflora
Cagra.27691s0001
I
0.879
Thhalv10012158m.g
Eutrema salsugineum
Thhalv10012158m.g
I
0.879
Si036303m.g
Setaria italica
Si036303m.g
I
0.879
Eucgr.J00531
Eucalyptus grandis
Eucgr.J00531
I
0.878
GSMUA_Achr11G16860_001
Musa acuminata
GSMUA_Achr11G16860_001
I
0.878
anac067
Arabidopsis thaliana
AT4G01520
I
0.877
GSMUA_Achr6G31580_001
Musa acuminata
GSMUA_Achr6G31580_001
I
0.877
GSMUA_Achr9G10040_001
Musa acuminata
GSMUA_Achr9G10040_001
I
0.876
LPERR08G03510
Leersia perrieri
LPERR08G03510
I
0.875
SapurV1A.0321s0350
Salix purpurea
SapurV1A.0321s0350
I
0.874
Pavir.Fb00405
Panicum virgatum
Pavir.Fb00405
I
0.874
Sb02g026510
Sorghum bicolor
Sb02g026510
I
0.874
MTR_8g023930
Medicago truncatula
MTR_8g023930
I
0.873
Pm019659
Prunus mume
Pm019659
I
0.872
Bra036326
Brassica rapa
Bra036326
I
0.872
Pavir.Ib01528
Panicum virgatum
Pavir.Ib01528
I
0.871
GLYMA12G31211
Glycine max
GLYMA12G31211
I
0.871