CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra033303
(
Brassica rapa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bra033303
T292669_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC004
M07161_2.00
Arabidopsis thaliana
CTTVYNYNRYAAGY
RCTTRYNRNRBAAG
Dap-seq
OMalley et al.(2016)
ANAC004_col_a
0.978
0.661
NAC004
M07162_2.00
Arabidopsis thaliana
WVCTTVYNBNRYAAGYWWBNN
NNVWWRCTTRYNVNRBAAGBW
Dap-seq
OMalley et al.(2016)
ANAC004_colamp_a
0.978
0.661
NAC005
M07163_2.00
Arabidopsis thaliana
WWNCTTVYNHHNYAAGTWW
WWACTTRNDDNRBAAGNWW
Dap-seq
OMalley et al.(2016)
ANAC005_col_a
0.963
0.643
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra033303.1-P
NAC/NAM
4
138
PVGYRFHPTDEEIVGDYVRPKNIESNTSHVDEVMNTVDIYEFDPWELLCKSRINSTDEVWYFFGCKKDQQNRGERQSRRTKSGFWKKTGVTMDIMRKRGNREKIGEKRVFVFQYSKILGGPSKPKSDWVMHEYVA
Links
Other
NAC/NAM
family TFs
Other
Brassica rapa
TFs
21 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra033308
Brassica rapa
Bra033308
I
0.996
Bra033300
Brassica rapa
Bra033300
I
0.987
Bo5g002910
Brassica oleracea
Bo5g002910
I
0.984
Bostr.5325s0016
Boechera stricta
Bostr.5325s0016
I
0.982
NAC004
Arabidopsis thaliana
AT1G02230
D
0.978
ANAC004
Arabidopsis lyrata
Al_scaffold_0001_137
I
0.976
Bra033306
Brassica rapa
Bra033306
I
0.971
Bo5g002950
Brassica oleracea
Bo5g002950
I
0.970
anac005
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1000123
I
0.964
NAC005
Arabidopsis thaliana
AT1G02250
D
0.963
Bostr.8819s0187
Boechera stricta
Bostr.8819s0187
I
0.958
Bostr.5325s0006
Boechera stricta
Bostr.5325s0006
I
0.946
anac048
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1000114
I
0.941
Bra032615
Brassica rapa
Bra032615
I
0.918
anac048
Arabidopsis thaliana
AT3G04420
I
0.917
Cagra.1968s0041
Capsella grandiflora
Cagra.1968s0041
I
0.907
Cagra.1968s0040
Capsella grandiflora
Cagra.1968s0040
I
0.906
Carubv10009727m.g
Capsella rubella
Carubv10009727m.g
I
0.906
Bo5g002960
Brassica oleracea
Bo5g002960
I
0.904
Bostr.5325s0017
Boechera stricta
Bostr.5325s0017
I
0.893
Bo8g117560
Brassica oleracea
Bo8g117560
I
0.879