CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra036326
(
Brassica rapa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bra036326
T292690_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.962
0.774
NAC68
M07214_2.00
Arabidopsis thaliana
RCTTVYNBNNYAAGY
RCTTRNNVNRBAAGY
Dap-seq
OMalley et al.(2016)
NTM1_col_a
0.895
0.713
NAC68
M07215_2.00
Arabidopsis thaliana
HDYYRCTTTTTNNHYHYHNNN
NNNDRDRDNNAAAAAGYRRHD
Dap-seq
OMalley et al.(2016)
NTM1_colamp_a
0.895
0.713
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra036326.1-P
NAC/NAM
5
133
PVGFRFSPTGLELINHYLKNKILDKPWLVDEAINEINICAHDPKFLPSLSKLESKDLVWYFFCRREYHVSEKKKGTKRTTPSGYWKATGVDRKIREKGVEIGIKKTLVYHEGKSTNGVWTPWVMHEYHI
Links
Other
NAC/NAM
family TFs
Other
Brassica rapa
TFs
36 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
anac067
Arabidopsis thaliana
AT4G01520
I
0.928
NAC68
Arabidopsis thaliana
AT4G01540
D
0.895
NAC69
Arabidopsis thaliana
AT4G01550
D
0.962
Bo00853s060
Brassica oleracea
Bo00853s060
I
0.979
Bo5g002810
Brassica oleracea
Bo5g002810
I
0.888
Bo5g002850
Brassica oleracea
Bo5g002850
I
0.898
Bo6g119080
Brassica oleracea
Bo6g119080
I
0.958
Bo9g004070
Brassica oleracea
Bo9g004070
I
0.952
Bo9g004090
Brassica oleracea
Bo9g004090
I
0.958
Bo9g004100
Brassica oleracea
Bo9g004100
I
0.944
Bo9g004110
Brassica oleracea
Bo9g004110
I
0.990
Bo9g061230
Brassica oleracea
Bo9g061230
I
0.876
Bostr.10064s0010
Boechera stricta
Bostr.10064s0010
I
0.878
Bostr.25375s0002
Boechera stricta
Bostr.25375s0002
I
0.883
Bostr.4825s0023
Boechera stricta
Bostr.4825s0023
I
0.967
Bostr.5325s0009
Boechera stricta
Bostr.5325s0009
I
0.921
Bostr.5325s0019
Boechera stricta
Bostr.5325s0019
I
0.896
Bra008553
Brassica rapa
Bra008553
I
0.972
Bra027596
Brassica rapa
Bra027596
I
0.872
Bra036327
Brassica rapa
Bra036327
I
0.962
Bra036328
Brassica rapa
Bra036328
I
0.953
Cagra.12529s0001
Capsella grandiflora
Cagra.12529s0001
I
0.877
Carubv10000489m.g
Capsella rubella
Carubv10000489m.g
I
0.907
Carubv10003260m.g
Capsella rubella
Carubv10003260m.g
I
0.971
cassava16016.m1
Manihot esculenta
cassava16016.m1
N
0.883
Ca_20988
Cicer arietinum
Ca_20988
I
0.887
ANAC001
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1000119
I
0.879
anac069
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002854
I
0.962
GSMUA_Achr1G03560_001
Musa acuminata
GSMUA_Achr1G03560_001
I
0.896
MDP0000282616
Malus domestica
MDP0000282616
I
0.900
MDP0000575835
Malus domestica
MDP0000575835
I
0.879
MTR_8g023840
Medicago truncatula
MTR_8g023840
I
0.910
POPTR_0009s16290
Populus trichocarpa
POPTR_0009s16290
N
0.872
SapurV1A.0561s0300
Salix purpurea
SapurV1A.0561s0300
N
0.877
TCM_041332
Theobroma cacao
TCM_041332
N
0.890
Thhalv10028684m.g
Eutrema salsugineum
Thhalv10028684m.g
I
0.963