CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra036328
(
Brassica rapa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bra036328
T292692_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.985
0.704
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.876
0.417
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.876
0.417
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY
RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.876
0.417
NAC68
M07214_2.00
Arabidopsis thaliana
RCTTVYNBNNYAAGY
RCTTRNNVNRBAAGY
Dap-seq
OMalley et al.(2016)
NTM1_col_a
0.876
0.643
NAC68
M07215_2.00
Arabidopsis thaliana
HDYYRCTTTTTNNHYHYHNNN
NNNDRDRDNNAAAAAGYRRHD
Dap-seq
OMalley et al.(2016)
NTM1_colamp_a
0.876
0.643
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra036328.1-P
NAC/NAM
5
136
NVGFRFCPTDEELINYFLKNKILGKPWLVDDKIREVSICSYEPASLPALSMIKSKDLVWYFLSPKEYKSPKKSLTKRTTPSGFWKSTGKDRKIKEDKRRDGVVIGIKKTLVYHEGKSSNAVPTPWIMHEYHI
Links
Other
NAC/NAM
family TFs
Other
Brassica rapa
TFs
199 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo9g004070
Brassica oleracea
Bo9g004070
I
0.994
NAC69
Arabidopsis thaliana
AT4G01550
D
0.985
anac069
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002854
I
0.985
Thhalv10028684m.g
Eutrema salsugineum
Thhalv10028684m.g
I
0.985
Bostr.4825s0023
Boechera stricta
Bostr.4825s0023
I
0.985
Carubv10003260m.g
Capsella rubella
Carubv10003260m.g
I
0.983
Bra008553
Brassica rapa
Bra008553
I
0.980
Bo00853s060
Brassica oleracea
Bo00853s060
I
0.975
Bostr.25375s0002
Boechera stricta
Bostr.25375s0002
I
0.971
Bra027596
Brassica rapa
Bra027596
I
0.969
Bo6g119080
Brassica oleracea
Bo6g119080
I
0.968
Bo9g004090
Brassica oleracea
Bo9g004090
I
0.968
Bo9g004110
Brassica oleracea
Bo9g004110
I
0.962
MTR_8g023840
Medicago truncatula
MTR_8g023840
I
0.955
MDP0000282616
Malus domestica
MDP0000282616
I
0.955
fgenesh1_pg.C_scaffold_3000386
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000386
I
0.954
Bra036326
Brassica rapa
Bra036326
I
0.953
Bostr.5325s0009
Boechera stricta
Bostr.5325s0009
I
0.947
SapurV1A.0003s0330
Salix purpurea
SapurV1A.0003s0330
I
0.946
Bo5g002850
Brassica oleracea
Bo5g002850
I
0.942
AMTR_s00018p00071850
Amborella trichopoda
AMTR_s00018p00071850
I
0.940
MTR_8g023860
Medicago truncatula
MTR_8g023860
I
0.940
Gorai.006G203800
Gossypium raimondii
Gorai.006G203800
I
0.938
mgf022344m
Mimulus guttatus
mgf022344m
I
0.938
Bo5g002810
Brassica oleracea
Bo5g002810
I
0.937
Ca_20988
Cicer arietinum
Ca_20988
I
0.937
Bo9g061230
Brassica oleracea
Bo9g061230
I
0.936
Carubv10009451m.g
Capsella rubella
Carubv10009451m.g
I
0.933
ONIVA08G03440
Oryza nivara
ONIVA08G03440
I
0.933
Bostr.5325s0019
Boechera stricta
Bostr.5325s0019
I
0.933
BGIOSGA027623
Oryza indica
BGIOSGA027623
I
0.933
OS08G0157900
Oryza sativa
OS08G0157900
I
0.933
ORUFI08G03870
Oryza rufipogon
ORUFI08G03870
I
0.933
Cagra.1968s0045
Capsella grandiflora
Cagra.1968s0045
I
0.932
Carubv10009049m.g
Capsella rubella
Carubv10009049m.g
I
0.932
Bo9g004100
Brassica oleracea
Bo9g004100
I
0.931
ANAC001
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1000119
I
0.931
MDP0000575835
Malus domestica
MDP0000575835
I
0.929
Gorai.004G125900
Gossypium raimondii
Gorai.004G125900
I
0.927
GRMZM2G003715
Zea mays
GRMZM2G003715
I
0.926
Carubv10000489m.g
Capsella rubella
Carubv10000489m.g
I
0.925
MTR_8g023930
Medicago truncatula
MTR_8g023930
I
0.925
Thhalv10007665m.g
Eutrema salsugineum
Thhalv10007665m.g
I
0.924
PRUPE_ppa022384mg
Prunus persica
PRUPE_ppa022384mg
I
0.923
OB08G13730
Oryza brachyantha
OB08G13730
I
0.923
MDP0000214515
Malus domestica
MDP0000214515
I
0.923
OPUNC08G03310
Oryza punctata
OPUNC08G03310
I
0.923
ORGLA08G0029000
Oryza glaberrima
ORGLA08G0029000
I
0.923
OMERI08G03500
Oryza meridionalis
OMERI08G03500
I
0.923
OLONG_000105
Oryza longistaminata
OLONG_000105
I
0.923
OGLUM08G03540
Oryza glumaepatula
OGLUM08G03540
I
0.923
OBART08G03460
Oryza barthii
OBART08G03460
I
0.923
Bra033296
Brassica rapa
Bra033296
I
0.923
GSMUA_AchrUn_randomG04060_001
Musa acuminata
GSMUA_AchrUn_randomG04060_001
I
0.923
MDP0000231843
Malus domestica
MDP0000231843
I
0.922
PRUPE_ppb017658mg
Prunus persica
PRUPE_ppb017658mg
I
0.922
Lus10032919.g
Linum usitatissimum
Lus10032919.g
I
0.920
GLYMA14G36840
Glycine max
GLYMA14G36840
I
0.919
Bra036327
Brassica rapa
Bra036327
I
0.919
evm.TU.contig_29561
Carica papaya
evm.TU.contig_29561
I
0.919
Eucgr.K02303
Eucalyptus grandis
Eucgr.K02303
I
0.919
MLOC_50406
Hordeum vulgare
MLOC_50406
I
0.918
TRIUR3_32613
Triticum urartu
TRIUR3_32613
I
0.918
Traes_7AL_669D4AE47
Triticum aestivum
Traes_7AL_669D4AE47
I
0.918
Traes_7BL_0C386426A
Triticum aestivum
Traes_7BL_0C386426A
I
0.918
Traes_7DL_AB67A0B36
Triticum aestivum
Traes_7DL_AB67A0B36
I
0.918
F775_30082
Aegilops tauschii
F775_30082
I
0.918
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
0.917
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
0.917
Pavir.Fb00405
Panicum virgatum
Pavir.Fb00405
I
0.917
GSMUA_Achr1G03560_001
Musa acuminata
GSMUA_Achr1G03560_001
I
0.917
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
0.917
MLOC_37843
Hordeum vulgare
MLOC_37843
I
0.917
Sb02g032230
Sorghum bicolor
Sb02g032230
I
0.917
TCM_015535
Theobroma cacao
TCM_015535
I
0.916
Ca_27204
Cicer arietinum
Ca_27204
I
0.916
LPERR09G14720
Leersia perrieri
LPERR09G14720
I
0.916
Si032702m.g
Setaria italica
Si032702m.g
I
0.916
Pavir.Bb02626
Panicum virgatum
Pavir.Bb02626
I
0.916
Pavir.Ba01386
Panicum virgatum
Pavir.Ba01386
I
0.916
OGLUM09G19480
Oryza glumaepatula
OGLUM09G19480
I
0.915
Pm019659
Prunus mume
Pm019659
I
0.915
OMERI09G14170
Oryza meridionalis
OMERI09G14170
I
0.915
OB09G25590
Oryza brachyantha
OB09G25590
I
0.915
LPERR08G03510
Leersia perrieri
LPERR08G03510
I
0.915
BGIOSGA031230
Oryza indica
BGIOSGA031230
I
0.915
ONIVA09G20130
Oryza nivara
ONIVA09G20130
I
0.915
ORGLA09G0151800
Oryza glaberrima
ORGLA09G0151800
I
0.915
Pm028711
Prunus mume
Pm028711
I
0.915
GSMUA_Achr3G00330_001
Musa acuminata
GSMUA_Achr3G00330_001
I
0.914
SapurV1A.0024s0340
Salix purpurea
SapurV1A.0024s0340
I
0.914
BRADI3G16480
Brachypodium distachyon
BRADI3G16480
I
0.914
GSMUA_Achr11G16860_001
Musa acuminata
GSMUA_Achr11G16860_001
I
0.914
Solyc03g080090.2
Solanum lycopersicum
Solyc03g080090.2
I
0.913
AMTR_s00018p00074980
Amborella trichopoda
AMTR_s00018p00074980
I
0.913
Pavir.Fa01901
Panicum virgatum
Pavir.Fa01901
I
0.912
Si013369m.g
Setaria italica
Si013369m.g
I
0.912
POPTR_0014s10330
Populus trichocarpa
POPTR_0014s10330
I
0.912
POPTR_0002s18320
Populus trichocarpa
POPTR_0002s18320
I
0.912
Pm028722
Prunus mume
Pm028722
I
0.911
Sb07g003900
Sorghum bicolor
Sb07g003900
I
0.911
mgf015836m
Mimulus guttatus
mgf015836m
I
0.910
PGSC0003DMG400000555
Solanum tuberosum
PGSC0003DMG400000555
I
0.910
Cagra.27691s0001
Capsella grandiflora
Cagra.27691s0001
I
0.909
MTR_5g069030
Medicago truncatula
MTR_5g069030
I
0.907
anac067
Arabidopsis thaliana
AT4G01520
I
0.907
Bostr.10064s0010
Boechera stricta
Bostr.10064s0010
I
0.907
Gorai.007G017500
Gossypium raimondii
Gorai.007G017500
I
0.906
BRADI4G37327
Brachypodium distachyon
BRADI4G37327
I
0.906
Lus10015587.g
Linum usitatissimum
Lus10015587.g
I
0.906
GSMUA_Achr11G07800_001
Musa acuminata
GSMUA_Achr11G07800_001
N
0.906
MTR_3g093050
Medicago truncatula
MTR_3g093050
I
0.904
Bostr.5325s0011
Boechera stricta
Bostr.5325s0011
I
0.904
Ca_04069
Cicer arietinum
Ca_04069
I
0.904
POPTR_0014s10360
Populus trichocarpa
POPTR_0014s10360
I
0.903
GLYMA12G31211
Glycine max
GLYMA12G31211
I
0.903
POPTR_0014s10350
Populus trichocarpa
POPTR_0014s10350
I
0.903
POPTR_0002s15560
Populus trichocarpa
POPTR_0002s15560
I
0.900
SapurV1A.0586s0170
Salix purpurea
SapurV1A.0586s0170
I
0.900
Cagra.12529s0001
Capsella grandiflora
Cagra.12529s0001
I
0.899
GSMUA_Achr4G32010_001
Musa acuminata
GSMUA_Achr4G32010_001
I
0.898
chr1.LjT41E18.160.nc
Lotus japonicus
chr1.LjT41E18.160.nc
I
0.898
F775_13961
Aegilops tauschii
F775_13961
I
0.898
GSMUA_Achr2G11810_001
Musa acuminata
GSMUA_Achr2G11810_001
I
0.898
GSMUA_Achr4G29170_001
Musa acuminata
GSMUA_Achr4G29170_001
I
0.896
Cagra.0334s0001
Capsella grandiflora
Cagra.0334s0001
I
0.896
Pm018442
Prunus mume
Pm018442
N
0.896
SELMODRAFT_69090
Selaginella moellendorffii
SELMODRAFT_69090
I
0.894
SELMODRAFT_71305
Selaginella moellendorffii
SELMODRAFT_71305
I
0.893
Aquca_009_00966
Aquilegia coerulea
Aquca_009_00966
I
0.893
Bo5g002860
Brassica oleracea
Bo5g002860
N
0.892
fgenesh1_pg.scaffold_182000024
Physcomitrella patens
fgenesh1_pg.scaffold_182000024
I
0.892
gene08448-v1.0-hybrid
Fragaria vesca
gene08448-v1.0-hybrid
I
0.892
cassava29774.valid.m1
Manihot esculenta
cassava29774.valid.m1
I
0.892
cassava29775.valid.m1
Manihot esculenta
cassava29775.valid.m1
I
0.892
POPTR_0002s18290
Populus trichocarpa
POPTR_0002s18290
I
0.891
PGSC0003DMG400019615
Solanum tuberosum
PGSC0003DMG400019615
I
0.891
POPTR_0014s07210
Populus trichocarpa
POPTR_0014s07210
I
0.891
Solyc11g068750.1
Solanum lycopersicum
Solyc11g068750.1
I
0.891
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
0.891
AMTR_s00022p00160350
Amborella trichopoda
AMTR_s00022p00160350
I
0.890
GSMUA_Achr9G10040_001
Musa acuminata
GSMUA_Achr9G10040_001
I
0.889
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
0.889
TCM_019937
Theobroma cacao
TCM_019937
N
0.888
Cla023594
Citrullus lanatus
Cla023594
I
0.887
MDP0000182344
Malus domestica
MDP0000182344
N
0.887
MDP0000136652
Malus domestica
MDP0000136652
N
0.887
SapurV1A.0162s0450
Salix purpurea
SapurV1A.0162s0450
I
0.887
ATAF1
Arabidopsis lyrata
scaffold_100066.1
I
0.887
POPTR_0002s18310
Populus trichocarpa
POPTR_0002s18310
I
0.886
gene23394-v1.0-hybrid
Fragaria vesca
gene23394-v1.0-hybrid
N
0.886
Eucgr.J00531
Eucalyptus grandis
Eucgr.J00531
I
0.885
OMERI04G25730
Oryza meridionalis
OMERI04G25730
I
0.885
OPUNC04G28220
Oryza punctata
OPUNC04G28220
I
0.884
SapurV1A.0321s0350
Salix purpurea
SapurV1A.0321s0350
I
0.884
VIT_15s0048g02320
Vitis vinifera
VIT_15s0048g02320
I
0.884
VIT_15s0048g02300
Vitis vinifera
VIT_15s0048g02300
N
0.883
MDP0000311190
Malus domestica
MDP0000311190
I
0.883
Sb02g026510
Sorghum bicolor
Sb02g026510
I
0.882
Solyc08g074300.2
Solanum lycopersicum
Solyc08g074300.2
I
0.882
GSMUA_Achr6G31580_001
Musa acuminata
GSMUA_Achr6G31580_001
I
0.881
Cla011742
Citrullus lanatus
Cla011742
I
0.880
GRMZM2G052239
Zea mays
GRMZM2G052239
I
0.880
gw1.6.394.1
Physcomitrella patens
gw1.6.394.1
I
0.879
NAC026
Arabidopsis thaliana
AT1G62700
I
0.879
Thhalv10023502m.g
Eutrema salsugineum
Thhalv10023502m.g
I
0.879
SapurV1A.0321s0360
Salix purpurea
SapurV1A.0321s0360
I
0.879
SapurV1A.0321s0340
Salix purpurea
SapurV1A.0321s0340
I
0.879
Gorai.005G088800
Gossypium raimondii
Gorai.005G088800
I
0.878
TCM_020121
Theobroma cacao
TCM_020121
I
0.878
Thhalv10012158m.g
Eutrema salsugineum
Thhalv10012158m.g
I
0.877
evm.TU.supercontig_3.170
Carica papaya
evm.TU.supercontig_3.170
N
0.877
TCM_020127
Theobroma cacao
TCM_020127
N
0.877
Bra033239
Brassica rapa
Bra033239
I
0.876
Bo5g001100
Brassica oleracea
Bo5g001100
I
0.876
Cagra.1968s0112
Capsella grandiflora
Cagra.1968s0112
I
0.876
Bostr.5325s0094
Boechera stricta
Bostr.5325s0094
I
0.876
NAC68
Arabidopsis thaliana
AT4G01540
D
0.876
Carubv10009926m.g
Capsella rubella
Carubv10009926m.g
I
0.876
NAC002
Arabidopsis thaliana
AT1G01720
D
0.876
PGSC0003DMG400029593
Solanum tuberosum
PGSC0003DMG400029593
I
0.876
gw1.1.690.1
Physcomitrella patens
gw1.1.690.1
I
0.876
Eucgr.F01463
Eucalyptus grandis
Eucgr.F01463
I
0.875
PRUPE_ppa023197mg
Prunus persica
PRUPE_ppa023197mg
N
0.875
GSMUA_Achr10G08120_001
Musa acuminata
GSMUA_Achr10G08120_001
I
0.874
Pavir.Ia03443
Panicum virgatum
Pavir.Ia03443
I
0.874
Aquca_014_00255
Aquilegia coerulea
Aquca_014_00255
I
0.873
MTR_8g023880
Medicago truncatula
MTR_8g023880
N
0.873
Gorai.010G051900
Gossypium raimondii
Gorai.010G051900
I
0.873
TCM_035160
Theobroma cacao
TCM_035160
I
0.873
gene35014-v1.0-hybrid
Fragaria vesca
gene35014-v1.0-hybrid
I
0.872
gene35013-v1.0-hybrid
Fragaria vesca
gene35013-v1.0-hybrid
N
0.872
Bostr.0556s0555
Boechera stricta
Bostr.0556s0555
I
0.872
GLYMA14G24220
Glycine max
GLYMA14G24220
I
0.872
Solyc11g017470.1
Solanum lycopersicum
Solyc11g017470.1
I
0.872
cassava28909.valid.m1
Manihot esculenta
cassava28909.valid.m1
I
0.872
MTR_2g068920
Medicago truncatula
MTR_2g068920
I
0.871
orange1.1g021772m.g
Citrus sinensis
orange1.1g021772m.g
N
0.871
Si022714m.g
Setaria italica
Si022714m.g
I
0.871