Bra040152 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra040152 T292704_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC047
M07198_2.00
Arabidopsis thaliana
CACGB

VCGTG
Dap-seq
OMalley et al.(2016)
ANAC047_colamp_a
0.955 0.982
NAC047
M07199_2.00
Arabidopsis thaliana
WNNNWYACGYMWYYN

NRRWKRCGTRWNNNW
Dap-seq
OMalley et al.(2016)
ANAC047_col
0.955 0.982
NAC045
M07194_2.00
Arabidopsis thaliana
TTNCTTSHNNNDCAMG

CKTGHNNNDSAAGNAA
Dap-seq
OMalley et al.(2016)
ANAC045_col_a
0.878 0.598
NAC045
M07195_2.00
Arabidopsis thaliana
TTNCTTSHNNNDCAMG

CKTGHNNNDSAAGNAA
Dap-seq
OMalley et al.(2016)
ANAC045_colamp_a
0.878 0.598
NAC018
M07176_2.00
Arabidopsis thaliana
DYACGBMAYYD

HRRTKVCGTRH
Dap-seq
OMalley et al.(2016)
NAM_colamp_a
0.873 0.786
NAC018
M07177_2.00
Arabidopsis thaliana
WDNCKWNHNNNWYACGBMA

TKVCGTRWNNNDNWMGNHW
Dap-seq
OMalley et al.(2016)
NAM_col_v3a
0.873 0.786
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra040152.1-P NAC/NAM 11 140

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo1g152220 Brassica oleracea Bo1g152220 I 0.963
Bra031949 Brassica rapa Bra031949 I 0.956
NAC047 Arabidopsis thaliana AT3G04070 D 0.955
Bostr.2570s0301 Boechera stricta Bostr.2570s0301 I 0.951
anac047 Arabidopsis lyrata fgenesh2_kg.3__367__AT3G04070.1 I 0.951
Cagra.2026s0001 Capsella grandiflora Cagra.2026s0001 I 0.951
Carubv10014000m.g Capsella rubella Carubv10014000m.g I 0.951
Bo5g148420 Brassica oleracea Bo5g148420 I 0.947
Thhalv10021011m.g Eutrema salsugineum Thhalv10021011m.g I 0.943
Ciclev10020717m.g Citrus clementina Ciclev10020717m.g I 0.926
orange1.1g017665m.g Citrus sinensis orange1.1g017665m.g I 0.926
cassava35701.valid.m1 Manihot esculenta cassava35701.valid.m1 I 0.920
SapurV1A.1058s0080 Salix purpurea SapurV1A.1058s0080 I 0.919
SapurV1A.2115s0010 Salix purpurea SapurV1A.2115s0010 I 0.919
29950.m001173 Ricinus communis 29950.m001173 I 0.915
POPTR_0019s04690 Populus trichocarpa POPTR_0019s04690 I 0.909
Lus10006547.g Linum usitatissimum Lus10006547.g I 0.909
Lus10042531.g Linum usitatissimum Lus10042531.g I 0.907
anac047 Vitis vinifera VIT_08s0007g07670 I 0.907
POPTR_0013s05080 Populus trichocarpa POPTR_0013s05080 I 0.903
cassava22631.valid.m1 Manihot esculenta cassava22631.valid.m1 I 0.903
Lus10003269.g Linum usitatissimum Lus10003269.g I 0.896
TCM_026030 Theobroma cacao TCM_026030 I 0.894
Gorai.007G267900 Gossypium raimondii Gorai.007G267900 I 0.893
Gorai.013G191800 Gossypium raimondii Gorai.013G191800 I 0.891
GLYMA19G28476 Glycine max GLYMA19G28476 I 0.889
SapurV1A.0867s0160 Salix purpurea SapurV1A.0867s0160 I 0.887
SapurV1A.1196s0040 Salix purpurea SapurV1A.1196s0040 I 0.887
Lus10018469.g Linum usitatissimum Lus10018469.g I 0.887
Lus10011215.g Linum usitatissimum Lus10011215.g I 0.887
Carubv10009524m.g Capsella rubella Carubv10009524m.g I 0.886
Cagra.0946s0024 Capsella grandiflora Cagra.0946s0024 I 0.886
GLYMA16G26740 Glycine max GLYMA16G26740 I 0.885
GLYMA02G07700 Glycine max GLYMA02G07700 I 0.884
GLYMA16G04740 Glycine max GLYMA16G04740 I 0.884
30078.m002348 Ricinus communis 30078.m002348 I 0.879
GLYMA12G22790 Glycine max GLYMA12G22790 I 0.879
Bo5g150170 Brassica oleracea Bo5g150170 I 0.878
Bo1g154830 Brassica oleracea Bo1g154830 I 0.878
NAC045 Arabidopsis thaliana AT3G03200 D 0.878
Thhalv10022055m.g Eutrema salsugineum Thhalv10022055m.g I 0.878
Bra021366 Brassica rapa Bra021366 I 0.878
Bra032009 Brassica rapa Bra032009 I 0.878
Cagra.2098s0066 Capsella grandiflora Cagra.2098s0066 I 0.878
Bostr.19046s0031 Boechera stricta Bostr.19046s0031 I 0.878
Carubv10013584m.g Capsella rubella Carubv10013584m.g I 0.878
anac045 Arabidopsis lyrata Al_scaffold_0003_260 I 0.878
Eucgr.B02485 Eucalyptus grandis Eucgr.B02485 I 0.876
MDP0000674514 Malus domestica MDP0000674514 I 0.876
Bostr.0124s0081 Boechera stricta Bostr.0124s0081 I 0.873
Bra021114 Brassica rapa Bra021114 I 0.873
NAC018 Arabidopsis thaliana AT1G52880 D 0.873
Bo1g128420 Brassica oleracea Bo1g128420 I 0.873
chr1.CM0104.240.nc Lotus japonicus chr1.CM0104.240.nc I 0.872
Thhalv10023058m.g Eutrema salsugineum Thhalv10023058m.g I 0.871