VND7 (Arabidopsis lyrata)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 fgenesh1_pm.C_scaffold_2001196 T292944_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC030
M00974_2.00 		Arabidopsis thaliana
NYACGBMWNN
NNWKVCGTRN		 PBM
Lindemose et al.(2014)
VND7 		0.962 0.982
NAC105
M00980_2.00 		Arabidopsis thaliana
NYWHKNHWNN
NNWDNMDWRN		 PBM
Lindemose et al.(2014)
VND3 		0.891 0.772
NAC105
M07245_2.00 		Arabidopsis thaliana
NTTGCTTVNNNHNYAMG
CKTRNDNNNBAAGCAAN		 Dap-seq
OMalley et al.(2016)
VND3_colamp_a 		0.891 0.772
NAC105
M07246_2.00 		Arabidopsis thaliana
TTGCTTVHNNHNYAMG
CKTRNDNNDBAAGCAA		 Dap-seq
OMalley et al.(2016)
VND3_col 		0.891 0.772
NAC037
M07187_2.00 		Arabidopsis thaliana
CKTVNDNHNYAMG
CKTRNDNHNBAMG		 Dap-seq
OMalley et al.(2016)
VND1_col_a 		0.886 0.816
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_2001196 NAC/NAM 10 137

Links

Other NAC/NAM family TFs
Other Arabidopsis lyrata TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra016098 Brassica rapa Bra016098 I 0.962
Bostr.10273s0160 Boechera stricta Bostr.10273s0160 I 0.962
Thhalv10018853m.g Eutrema salsugineum Thhalv10018853m.g I 0.962
Cagra.4006s0034 Capsella grandiflora Cagra.4006s0034 I 0.962
NAC030 Arabidopsis thaliana AT1G71930 D 0.962
Carubv10020645m.g Capsella rubella Carubv10020645m.g I 0.962
Bo6g114440 Brassica oleracea Bo6g114440 I 0.961
GLYMA20G31551 Glycine max GLYMA20G31551 I 0.948
MTR_1g096430 Medicago truncatula MTR_1g096430 I 0.945
Eucgr.F02615 Eucalyptus grandis Eucgr.F02615 I 0.944
PGSC0003DMG400000887 Solanum tuberosum PGSC0003DMG400000887 I 0.943
Ca_04309 Cicer arietinum Ca_04309 I 0.942
Bra007996 Brassica rapa Bra007996 I 0.940
Bo2g075130 Brassica oleracea Bo2g075130 I 0.940
VND7 Vitis vinifera VIT_18s0072g01060 I 0.939
SapurV1A.0179s0040 Salix purpurea SapurV1A.0179s0040 I 0.938
cassava25360.m1 Manihot esculenta cassava25360.m1 I 0.938
LjSGA_075859.1 Lotus japonicus LjSGA_075859.1 I 0.937
GLYMA10G36050 Glycine max GLYMA10G36050 I 0.937
evm.TU.contig_30558 Carica papaya evm.TU.contig_30558 I 0.936
POPTR_0013s11740 Populus trichocarpa POPTR_0013s11740 I 0.935
Pm022184 Prunus mume Pm022184 I 0.935
MDP0000849944 Malus domestica MDP0000849944 I 0.935
orange1.1g019821m.g Citrus sinensis orange1.1g019821m.g I 0.934
Ciclev10003255m.g Citrus clementina Ciclev10003255m.g I 0.934
PRUPE_ppa016236mg Prunus persica PRUPE_ppa016236mg I 0.933
29728.m000815 Ricinus communis 29728.m000815 I 0.933
TCM_036364 Theobroma cacao TCM_036364 I 0.930
MDP0000902822 Malus domestica MDP0000902822 I 0.930
mgf009391m Mimulus guttatus mgf009391m I 0.928
Cla016604 Citrullus lanatus Cla016604 I 0.928
PGSC0003DMG400026079 Solanum tuberosum PGSC0003DMG400026079 I 0.927
Solyc06g065410.2 Solanum lycopersicum Solyc06g065410.2 I 0.927
Lus10017915.g Linum usitatissimum Lus10017915.g I 0.925
Aquca_007_00369 Aquilegia coerulea Aquca_007_00369 I 0.924
Cucsa.240650 Cucumis sativus Cucsa.240650 I 0.923
cassava40790.m1 Manihot esculenta cassava40790.m1 I 0.921
MTR_5g021710 Medicago truncatula MTR_5g021710 I 0.919
Solyc11g018660.1 Solanum lycopersicum Solyc11g018660.1 I 0.918
POPTR_0019s11330 Populus trichocarpa POPTR_0019s11330 I 0.917
Ca_01981 Cicer arietinum Ca_01981 I 0.916
GLYMA11G07990 Glycine max GLYMA11G07990 I 0.915
GLYMA01G37310 Glycine max GLYMA01G37310 I 0.915
SapurV1A.1801s0020 Salix purpurea SapurV1A.1801s0020 I 0.915
SapurV1A.0287s0290 Salix purpurea SapurV1A.0287s0290 I 0.915
SapurV1A.2633s0010 Salix purpurea SapurV1A.2633s0010 I 0.915
SapurV1A.0287s0280 Salix purpurea SapurV1A.0287s0280 I 0.915
Gorai.013G140700 Gossypium raimondii Gorai.013G140700 I 0.910
Bostr.0568s0042 Boechera stricta Bostr.0568s0042 I 0.905
Cagra.10427s0040 Capsella grandiflora Cagra.10427s0040 I 0.905
Carubv10026898m.g Capsella rubella Carubv10026898m.g I 0.905
ANAC105 Arabidopsis lyrata fgenesh2_kg.8__2792__AT5G66300.1 I 0.905
Bo7g065010 Brassica oleracea Bo7g065010 I 0.904
Bra012065 Brassica rapa Bra012065 I 0.904
POPTR_0007s13910 Populus trichocarpa POPTR_0007s13910 I 0.901
PK11173.1 Cannabis sativa PK11173.1 I 0.893
PDK_20s1503311g001 Phoenix dactylifera PDK_20s1503311g001 I 0.893
GLYMA16G24200 Glycine max GLYMA16G24200 I 0.892
NAC105 Arabidopsis thaliana AT5G66300 D 0.891
Thhalv10022756m.g Eutrema salsugineum Thhalv10022756m.g I 0.889
Aquca_006_00155 Aquilegia coerulea Aquca_006_00155 I 0.889
VND1 Arabidopsis lyrata Al_scaffold_0003_3772 I 0.889
Gorai.008G063600 Gossypium raimondii Gorai.008G063600 I 0.889
GLYMA02G05620 Glycine max GLYMA02G05620 I 0.889
evm.TU.supercontig_6.226 Carica papaya evm.TU.supercontig_6.226 I 0.888
Ciclev10026114m.g Citrus clementina Ciclev10026114m.g I 0.888
orange1.1g021187m.g Citrus sinensis orange1.1g021187m.g I 0.888
POPTR_0005s11870 Populus trichocarpa POPTR_0005s11870 I 0.888
SapurV1A.0487s0230 Salix purpurea SapurV1A.0487s0230 I 0.888
TCM_000235 Theobroma cacao TCM_000235 I 0.888
ANAC076 Vitis vinifera VIT_04s0023g03110 I 0.888
cassava24947.valid.m1 Manihot esculenta cassava24947.valid.m1 I 0.888
Bo7g011640 Brassica oleracea Bo7g011640 I 0.887
Gorai.003G010700 Gossypium raimondii Gorai.003G010700 I 0.887
cassava26615.m1 Manihot esculenta cassava26615.m1 I 0.887
28623.m000400 Ricinus communis 28623.m000400 I 0.886
PGSC0003DMG401003552 Solanum tuberosum PGSC0003DMG401003552 I 0.886
Solyc02g084350.2 Solanum lycopersicum Solyc02g084350.2 I 0.886
NAC037 Arabidopsis thaliana AT2G18060 D 0.886
PDK_20s1306451g001 Phoenix dactylifera PDK_20s1306451g001 I 0.885
Gorai.007G196400 Gossypium raimondii Gorai.007G196400 I 0.885
Eucgr.I02366 Eucalyptus grandis Eucgr.I02366 I 0.884
GSMUA_Achr8G12100_001 Musa acuminata GSMUA_Achr8G12100_001 I 0.882
GSMUA_Achr11G03040_001 Musa acuminata GSMUA_Achr11G03040_001 I 0.882
Bo3g093950 Brassica oleracea Bo3g093950 I 0.881
mgf022574m Mimulus guttatus mgf022574m I 0.881
Cucsa.043420 Cucumis sativus Cucsa.043420 I 0.880
Lus10028372.g Linum usitatissimum Lus10028372.g I 0.877
ANAC076 Arabidopsis lyrata fgenesh2_kg.7__450__AT4G36160.1 I 0.877
Lus10041822.g Linum usitatissimum Lus10041822.g I 0.877
Carubv10004997m.g Capsella rubella Carubv10004997m.g I 0.877
Bo7g117820 Brassica oleracea Bo7g117820 I 0.877
Cagra.4734s0006 Capsella grandiflora Cagra.4734s0006 I 0.877
Bra017750 Brassica rapa Bra017750 I 0.877
Bostr.18351s0273 Boechera stricta Bostr.18351s0273 I 0.875
Pavir.Ib00161 Panicum virgatum Pavir.Ib00161 I 0.873
Si036363m.g Setaria italica Si036363m.g I 0.873
Sb01g048730 Sorghum bicolor Sb01g048730 I 0.873
Thhalv10025510m.g Eutrema salsugineum Thhalv10025510m.g I 0.872
Solyc08g079120.1 Solanum lycopersicum Solyc08g079120.1 I 0.871
Bo1g005810 Brassica oleracea Bo1g005810 I 0.871
Bra011667 Brassica rapa Bra011667 I 0.871