CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VND7
(
Arabidopsis lyrata
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
fgenesh1_pm.C_scaffold_2001196
T292944_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC030
M00974_2.00
Arabidopsis thaliana
NYACGBMWNN
NNWKVCGTRN
PBM
Lindemose et al.(2014)
VND7
0.962
0.982
NAC105
M00980_2.00
Arabidopsis thaliana
NYWHKNHWNN
NNWDNMDWRN
PBM
Lindemose et al.(2014)
VND3
0.891
0.772
NAC105
M07245_2.00
Arabidopsis thaliana
NTTGCTTVNNNHNYAMG
CKTRNDNNNBAAGCAAN
Dap-seq
OMalley et al.(2016)
VND3_colamp_a
0.891
0.772
NAC105
M07246_2.00
Arabidopsis thaliana
TTGCTTVHNNHNYAMG
CKTRNDNNDBAAGCAA
Dap-seq
OMalley et al.(2016)
VND3_col
0.891
0.772
NAC037
M07187_2.00
Arabidopsis thaliana
CKTVNDNHNYAMG
CKTRNDNHNBAMG
Dap-seq
OMalley et al.(2016)
VND1_col_a
0.886
0.816
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_2001196
NAC/NAM
10
137
PPGFRFHPTEEELVGYYLERKINSMKSALDVIVEIDLYKMEPWDIQARCKLGYEEQNEWYFFSHKDRKYPTGTRTNRATAAGFWKATGRDKAVLSKNIVIGMRKTLVYYKGRAPNGRKSDWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Arabidopsis lyrata
TFs
102 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy