CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400028779
(
Solanum tuberosum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
PGSC0003DMG400028779
T295162_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac058
M00886_2.00
Arabidopsis thaliana
CGTTGTCT
AGACAACG
PBM
Franco-Zorrilla et al.(2014)
ANAC58
0.941
0.868
anac058
M07210_2.00
Arabidopsis thaliana
CKTGHNNNRCAMGYWA
TWRCKTGYNNNDCAMG
Dap-seq
OMalley et al.(2016)
ANAC058_col_a
0.941
0.868
anac058
M07211_2.00
Arabidopsis thaliana
TDCKTGHNNNDCAMGHHA
TDDCKTGHNNNDCAMGHA
Dap-seq
OMalley et al.(2016)
ANAC058_colamp_a
0.941
0.868
ANAC038
M07188_2.00
Arabidopsis thaliana
DNCKTRHNNHDCAMGYWA
TWRCKTGHDNNDYAMGNH
Dap-seq
OMalley et al.(2016)
ANAC038_col_a
0.877
0.772
ANAC038
M07189_2.00
Arabidopsis thaliana
TTDCTTGWNNHDYAMGHHAHH
DDTDDCKTRHDNNWCAAGHAA
Dap-seq
OMalley et al.(2016)
ANAC038_colamp_a
0.877
0.772
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400074048
NAC/NAM
7
132
PPGFRFHPSDEELITYYLSNKVSDFSFTTRAIVDVDLNKSEPWDLPAKASMGEKEWYFFNQKDRKYPTGLRTNRATEAGYWKTTGKDKEIFRGGVELVGMKKTLVFYKGRAPKGEKTNWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Solanum tuberosum
TFs
126 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy