POPTR_0010s23630 (Populus trichocarpa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 POPTR_0010s23630 T295293_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC050
M07200_2.00 		Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a 		0.940 0.868
ANAC050
M07201_2.00 		Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a 		0.940 0.868
NAC078
M02372_2.00 		Arabidopsis thaliana
NNRCAMGHMANN
NNTKDCKTGYNN		 PBM
Weirauch et al.(2014)
pTH7209 		0.874 0.789
NAC078
M07226_2.00 		Arabidopsis thaliana
TTDCTTGNDNNDCAAG
CTTGHNNHNCAAGHAA		 Dap-seq
OMalley et al.(2016)
NAC2_colamp_a 		0.874 0.789
NAC078
M07227_2.00 		Arabidopsis thaliana
DTTWCTTGNNNNRCAAG
CTTGYNNNNCAAGWAAH		 Dap-seq
OMalley et al.(2016)
NAC2_col_v3a 		0.874 0.789
NAC078
M11083_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$NAC078_Q2 		0.874 0.789
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s23630.1 NAC/NAM 40 166

Links

Other NAC/NAM family TFs
Other Populus trichocarpa TFs

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0213s0310 Salix purpurea SapurV1A.0213s0310 I 0.968
Lus10038670.g Linum usitatissimum Lus10038670.g I 0.965
Lus10037939.g Linum usitatissimum Lus10037939.g I 0.965
cassava22912.valid.m1 Manihot esculenta cassava22912.valid.m1 I 0.964
Ciclev10031606m.g Citrus clementina Ciclev10031606m.g I 0.957
orange1.1g014130m.g Citrus sinensis orange1.1g014130m.g I 0.957
TCM_043357 Theobroma cacao TCM_043357 I 0.957
Gorai.012G007000 Gossypium raimondii Gorai.012G007000 I 0.956
Gorai.009G309300 Gossypium raimondii Gorai.009G309300 I 0.956
ANAC050 Arabidopsis thaliana AT3G10480 D 0.951
Thhalv10020745m.g Eutrema salsugineum Thhalv10020745m.g I 0.943
Lus10023537.g Linum usitatissimum Lus10023537.g I 0.942
Thhalv10020717m.g Eutrema salsugineum Thhalv10020717m.g I 0.941
ANAC052 Arabidopsis lyrata fgenesh2_kg.3__1083__AT3G10490.2 I 0.940
Bostr.22252s0011 Boechera stricta Bostr.22252s0011 I 0.940
Bostr.22252s0012 Boechera stricta Bostr.22252s0012 I 0.940
Cagra.0834s0029 Capsella grandiflora Cagra.0834s0029 I 0.940
ANAC050 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000864 I 0.940
Carubv10013694m.g Capsella rubella Carubv10013694m.g I 0.940
Cagra.0834s0028 Capsella grandiflora Cagra.0834s0028 I 0.939
Carubv10013564m.g Capsella rubella Carubv10013564m.g I 0.939
Gorai.011G234200 Gossypium raimondii Gorai.011G234200 I 0.937
PK06477.1 Cannabis sativa PK06477.1 I 0.929
GLYMA20G33430 Glycine max GLYMA20G33430 I 0.928
GLYMA10G34130 Glycine max GLYMA10G34130 I 0.928
Ca_08371 Cicer arietinum Ca_08371 I 0.927
MDP0000437676 Malus domestica MDP0000437676 I 0.927
chr5.CM0909.750.nc Lotus japonicus chr5.CM0909.750.nc I 0.925
Cla020838 Citrullus lanatus Cla020838 I 0.924
MDP0000258167 Malus domestica MDP0000258167 I 0.923
MTR_1g090720 Medicago truncatula MTR_1g090720 I 0.923
Cucsa.308760 Cucumis sativus Cucsa.308760 I 0.922
Bo5g137360 Brassica oleracea Bo5g137360 I 0.920
Bra029844 Brassica rapa Bra029844 I 0.920
Bo1g143840 Brassica oleracea Bo1g143840 I 0.920
Pm017547 Prunus mume Pm017547 I 0.920
Bra034119 Brassica rapa Bra034119 I 0.920
ANAC052 Arabidopsis thaliana AT3G10490 I 0.918
PGSC0003DMG401023373 Solanum tuberosum PGSC0003DMG401023373 I 0.915
VIT_13s0019g05240 Vitis vinifera VIT_13s0019g05240 I 0.912
Solyc05g055480.2 Solanum lycopersicum Solyc05g055480.2 I 0.911
VIT_13s0019g05230 Vitis vinifera VIT_13s0019g05230 I 0.909
Bo1g143850 Brassica oleracea Bo1g143850 I 0.908
Bra034118 Brassica rapa Bra034118 I 0.908
Bra001366 Brassica rapa Bra001366 I 0.899
Si013361m.g Setaria italica Si013361m.g I 0.897
gene23561-v1.0-hybrid Fragaria vesca gene23561-v1.0-hybrid I 0.894
BRADI3G12470 Brachypodium distachyon BRADI3G12470 I 0.894
LPERR08G20450 Leersia perrieri LPERR08G20450 I 0.894
Sb07g023900 Sorghum bicolor Sb07g023900 I 0.894
Pavir.Fa00048 Panicum virgatum Pavir.Fa00048 I 0.894
Pavir.Fb02407 Panicum virgatum Pavir.Fb02407 I 0.894
F775_27564 Aegilops tauschii F775_27564 I 0.893
Traes_7BL_FB5FAC1E8 Triticum aestivum Traes_7BL_FB5FAC1E8 I 0.893
Eucgr.J01038 Eucalyptus grandis Eucgr.J01038 I 0.893
Traes_7DS_9FBF54244 Triticum aestivum Traes_7DS_9FBF54244 I 0.893
TRIUR3_33524 Triticum urartu TRIUR3_33524 I 0.893
OB08G30590 Oryza brachyantha OB08G30590 I 0.891
mgf004743m Mimulus guttatus mgf004743m I 0.890
Cagra.9217s0020 Capsella grandiflora Cagra.9217s0020 I 0.889
Solyc05g055470.2 Solanum lycopersicum Solyc05g055470.2 I 0.889
mgf020265m Mimulus guttatus mgf020265m I 0.887
PGSC0003DMG402023373 Solanum tuberosum PGSC0003DMG402023373 I 0.884
OLONG_023179 Oryza longistaminata OLONG_023179 I 0.884
OGLUM08G25240 Oryza glumaepatula OGLUM08G25240 I 0.884
OBART08G23760 Oryza barthii OBART08G23760 I 0.884
BGIOSGA026481 Oryza indica BGIOSGA026481 I 0.884
OMERI08G18580 Oryza meridionalis OMERI08G18580 I 0.884
ONIVA08G26810 Oryza nivara ONIVA08G26810 I 0.884
OS08G0562200 Oryza sativa OS08G0562200 I 0.884
ORGLA08G0191600 Oryza glaberrima ORGLA08G0191600 I 0.884
ORUFI08G26250 Oryza rufipogon ORUFI08G26250 I 0.884
OPUNC08G21700 Oryza punctata OPUNC08G21700 I 0.884
PGSC0003DMG400031072 Solanum tuberosum PGSC0003DMG400031072 N 0.882
Bo3g062710 Brassica oleracea Bo3g062710 I 0.881
mgf000623m Mimulus guttatus mgf000623m I 0.881
Solyc11g008010.1 Solanum lycopersicum Solyc11g008010.1 N 0.880
BRADI3G56080 Brachypodium distachyon BRADI3G56080 I 0.876
Bostr.2128s0007 Boechera stricta Bostr.2128s0007 I 0.874
Pavir.Aa00085 Panicum virgatum Pavir.Aa00085 I 0.874
NAC2 Arabidopsis lyrata scaffold_600382.1 I 0.874
NAC078 Arabidopsis thaliana AT5G04410 D 0.874
Traes_6AL_8BA1FF8B2 Triticum aestivum Traes_6AL_8BA1FF8B2 I 0.874
Si016620m.g Setaria italica Si016620m.g I 0.874
Bra001365 Brassica rapa Bra001365 I 0.873
Bo3g062700 Brassica oleracea Bo3g062700 I 0.873
Bra028790 Brassica rapa Bra028790 I 0.872
Pavir.Ab03009 Panicum virgatum Pavir.Ab03009 I 0.871
mgf012700m Mimulus guttatus mgf012700m N 0.871
Sb04g037720 Sorghum bicolor Sb04g037720 I 0.871
GRMZM2G113950 Zea mays GRMZM2G113950 I 0.871