POPTR_0013s05080 (Populus trichocarpa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 POPTR_0013s05080 T295313_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC047
M07198_2.00 		Arabidopsis thaliana
CACGB
VCGTG		 Dap-seq
OMalley et al.(2016)
ANAC047_colamp_a 		0.907 0.821
NAC047
M07199_2.00 		Arabidopsis thaliana
WNNNWYACGYMWYYN
NRRWKRCGTRWNNNW		 Dap-seq
OMalley et al.(2016)
ANAC047_col 		0.907 0.821
NAC018
M07176_2.00 		Arabidopsis thaliana
DYACGBMAYYD
HRRTKVCGTRH		 Dap-seq
OMalley et al.(2016)
NAM_colamp_a 		0.894 0.768
NAC018
M07177_2.00 		Arabidopsis thaliana
WDNCKWNHNNNWYACGBMA
TKVCGTRWNNNDNWMGNHW		 Dap-seq
OMalley et al.(2016)
NAM_col_v3a 		0.894 0.768
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0013s05080.1 NAC/NAM 9 143

Links

Other NAC/NAM family TFs
Other Populus trichocarpa TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.1196s0040 Salix purpurea SapurV1A.1196s0040 I 0.949
SapurV1A.0867s0160 Salix purpurea SapurV1A.0867s0160 I 0.949
29950.m001173 Ricinus communis 29950.m001173 I 0.948
cassava35701.valid.m1 Manihot esculenta cassava35701.valid.m1 I 0.944
Lus10006547.g Linum usitatissimum Lus10006547.g I 0.943
SapurV1A.1058s0080 Salix purpurea SapurV1A.1058s0080 I 0.943
SapurV1A.2115s0010 Salix purpurea SapurV1A.2115s0010 I 0.943
Lus10042531.g Linum usitatissimum Lus10042531.g I 0.942
POPTR_0019s04690 Populus trichocarpa POPTR_0019s04690 I 0.941
orange1.1g017665m.g Citrus sinensis orange1.1g017665m.g I 0.941
Ciclev10020717m.g Citrus clementina Ciclev10020717m.g I 0.941
Lus10003269.g Linum usitatissimum Lus10003269.g I 0.940
cassava22631.valid.m1 Manihot esculenta cassava22631.valid.m1 I 0.938
TCM_026030 Theobroma cacao TCM_026030 I 0.938
Gorai.013G191800 Gossypium raimondii Gorai.013G191800 I 0.933
Gorai.007G267900 Gossypium raimondii Gorai.007G267900 I 0.918
Bostr.2570s0301 Boechera stricta Bostr.2570s0301 I 0.916
Carubv10014000m.g Capsella rubella Carubv10014000m.g I 0.916
Cagra.2026s0001 Capsella grandiflora Cagra.2026s0001 I 0.916
anac047 Arabidopsis lyrata fgenesh2_kg.3__367__AT3G04070.1 I 0.916
Eucgr.K01471 Eucalyptus grandis Eucgr.K01471 N 0.911
anac047 Vitis vinifera VIT_08s0007g07670 I 0.907
NAC047 Arabidopsis thaliana AT3G04070 D 0.907
Bo5g148420 Brassica oleracea Bo5g148420 I 0.906
Thhalv10021011m.g Eutrema salsugineum Thhalv10021011m.g I 0.903
Bo1g152220 Brassica oleracea Bo1g152220 I 0.903
Bra040152 Brassica rapa Bra040152 I 0.903
Cagra.0946s0024 Capsella grandiflora Cagra.0946s0024 I 0.899
Carubv10009524m.g Capsella rubella Carubv10009524m.g I 0.899
Bo1g128420 Brassica oleracea Bo1g128420 I 0.898
Bra021114 Brassica rapa Bra021114 I 0.898
Lus10011215.g Linum usitatissimum Lus10011215.g I 0.895
Lus10018469.g Linum usitatissimum Lus10018469.g I 0.895
30078.m002348 Ricinus communis 30078.m002348 I 0.895
Bostr.0124s0081 Boechera stricta Bostr.0124s0081 I 0.894
Bra031949 Brassica rapa Bra031949 I 0.894
NAC018 Arabidopsis thaliana AT1G52880 D 0.894
GLYMA12G22790 Glycine max GLYMA12G22790 I 0.891
NAM Arabidopsis lyrata fgenesh2_kg.1__4366__AT1G52880.1 I 0.889
MDP0000674514 Malus domestica MDP0000674514 I 0.887
PRUPE_ppa007445mg Prunus persica PRUPE_ppa007445mg I 0.887
MDP0000180683 Malus domestica MDP0000180683 I 0.887
Pm025312 Prunus mume Pm025312 I 0.887
Traes_4DL_F0BE36C9D Triticum aestivum Traes_4DL_F0BE36C9D I 0.882
MLOC_65101 Hordeum vulgare MLOC_65101 I 0.882
F775_02308 Aegilops tauschii F775_02308 I 0.882
LPERR03G13950 Leersia perrieri LPERR03G13950 I 0.882
Traes_4AS_DBDA5E9C6 Triticum aestivum Traes_4AS_DBDA5E9C6 I 0.882
TRIUR3_29857 Triticum urartu TRIUR3_29857 I 0.882
OPUNC03G15460 Oryza punctata OPUNC03G15460 I 0.881
GLYMA06G38440 Glycine max GLYMA06G38440 I 0.881
MDP0000404409 Malus domestica MDP0000404409 I 0.877
Bo3g066880 Brassica oleracea Bo3g066880 I 0.875
OLONG_005610 Oryza longistaminata OLONG_005610 I 0.875
ORGLA03G0152700 Oryza glaberrima ORGLA03G0152700 I 0.875
ORUFI03G16510 Oryza rufipogon ORUFI03G16510 I 0.875
ONIVA03G16920 Oryza nivara ONIVA03G16920 I 0.875
OMERI03G14270 Oryza meridionalis OMERI03G14270 I 0.875
OGLUM03G16100 Oryza glumaepatula OGLUM03G16100 I 0.875
OBART03G15960 Oryza barthii OBART03G15960 I 0.875
anac025 Vitis vinifera VIT_00s0375g00040 I 0.873
Eucgr.A02070 Eucalyptus grandis Eucgr.A02070 I 0.873
GLYMA19G28476 Glycine max GLYMA19G28476 I 0.872
Cucsa.341800 Cucumis sativus Cucsa.341800 I 0.871