CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si010553m.g
(
Setaria italica
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Si010553m.g
T295704_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC098
M07239_2.00
Arabidopsis thaliana
CKTGTNNNDYAMGYHA
TDRCKTRHNNNACAMG
Dap-seq
OMalley et al.(2016)
CUC2_colamp_a
0.889
0.781
NAC098
M07240_2.00
Arabidopsis thaliana
NNNTWNCKTGHNNHWCAMG
CKTGWDNNDCAMGNWANNN
Dap-seq
OMalley et al.(2016)
CUC2_col
0.889
0.781
e_gw1.327.11.1
M02382_2.00
Physcomitrella patens
NTTDYRTWWN
NWWAYRHAAN
PBM
Weirauch et al.(2014)
pTH8478
0.884
0.702
e_gw1.288.15.1
M02381_2.00
Physcomitrella patens
NNNBAMKNHW
WDNMKTVNNN
PBM
Weirauch et al.(2014)
pTH8467
0.882
0.702
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si010553m
NAC/NAM
12
136
PPGFRFHPTDEELITHYLARKVADARFAAFAVSEADLNKCEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATEAGYWKATGKDKDIFRGKALVGSKKTLVFYTGRAPKGEKSGWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Setaria italica
TFs
196 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy