CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si015498m.g
(
Setaria italica
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Si015498m.g
T295723_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC031
M07182_2.00
Arabidopsis thaliana
NTWDCKTGTNNHWYACGY
RCGTRWDNNACAMGHWAN
Dap-seq
OMalley et al.(2016)
CUC3_col_a
0.905
0.737
NAC031
M07183_2.00
Arabidopsis thaliana
CKTGTNNHDCACGYHA
TDRCGTGHDNNACAMG
Dap-seq
OMalley et al.(2016)
CUC3_colamp_a
0.905
0.737
NAC098
M07239_2.00
Arabidopsis thaliana
CKTGTNNNDYAMGYHA
TDRCKTRHNNNACAMG
Dap-seq
OMalley et al.(2016)
CUC2_colamp_a
0.899
0.754
NAC098
M07240_2.00
Arabidopsis thaliana
NNNTWNCKTGHNNHWCAMG
CKTGWDNNDCAMGNWANNN
Dap-seq
OMalley et al.(2016)
CUC2_col
0.899
0.754
e_gw1.288.15.1
M02381_2.00
Physcomitrella patens
NNNBAMKNHW
WDNMKTVNNN
PBM
Weirauch et al.(2014)
pTH8467
0.877
0.746
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si015498m
NAC/NAM
30
156
PPGFRFHPTDEELVTFYLAAKVFNGACCGVDIAEVDLNRCEPWELPEAARMGEREWYFFSLRDRKYPTGMRTNRATGAGYWKATGKDREVLNTATGALLGMKKTLVFYKGRAPRGEKTKWVLHEYRL
Links
Other
NAC/NAM
family TFs
Other
Setaria italica
TFs
161 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy