CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc12g036480.1
(
Solanum lycopersicum
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Solyc12g036480.1
T295907_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac058
M00886_2.00
Arabidopsis thaliana
CGTTGTCT
AGACAACG
PBM
Franco-Zorrilla et al.(2014)
ANAC58
0.933
0.842
anac058
M07210_2.00
Arabidopsis thaliana
CKTGHNNNRCAMGYWA
TWRCKTGYNNNDCAMG
Dap-seq
OMalley et al.(2016)
ANAC058_col_a
0.933
0.842
anac058
M07211_2.00
Arabidopsis thaliana
TDCKTGHNNNDCAMGHHA
TDDCKTGHNNNDCAMGHA
Dap-seq
OMalley et al.(2016)
ANAC058_colamp_a
0.933
0.842
ANAC038
M07188_2.00
Arabidopsis thaliana
DNCKTRHNNHDCAMGYWA
TWRCKTGHDNNDYAMGNH
Dap-seq
OMalley et al.(2016)
ANAC038_col_a
0.896
0.816
ANAC038
M07189_2.00
Arabidopsis thaliana
TTDCTTGWNNHDYAMGHHAHH
DDTDDCKTRHDNNWCAAGHAA
Dap-seq
OMalley et al.(2016)
ANAC038_colamp_a
0.896
0.816
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc12g036480.1.1
NAC/NAM
6
132
PPGFRFHPTDEELITCYLNNKISDFNFTTRAIADVDLNKSEPWDLPAKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKTTGKDKEIYRGGTGVLVGMKKTLVFYRGRAPKGEKTNWVMHEYRI
Links
Other
NAC/NAM
family TFs
Other
Solanum lycopersicum
TFs
140 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGSC0003DMG400005384
Solanum tuberosum
PGSC0003DMG400005384
I
0.964
PGSC0003DMG400028779
Solanum tuberosum
PGSC0003DMG400028779
I
0.960
Solyc06g069100.1
Solanum lycopersicum
Solyc06g069100.1
I
0.958
GSMUA_Achr10G19900_001
Musa acuminata
GSMUA_Achr10G19900_001
I
0.952
OPUNC03G24220
Oryza punctata
OPUNC03G24220
I
0.947
mgf021065m
Mimulus guttatus
mgf021065m
I
0.947
Si036535m.g
Setaria italica
Si036535m.g
I
0.944
Aquca_026_00305
Aquilegia coerulea
Aquca_026_00305
I
0.942
GSMUA_Achr8G18420_001
Musa acuminata
GSMUA_Achr8G18420_001
I
0.941
Sb01g014310
Sorghum bicolor
Sb01g014310
I
0.941
LPERR03G21900
Leersia perrieri
LPERR03G21900
I
0.941
Gorai.006G060900
Gossypium raimondii
Gorai.006G060900
I
0.941
ONIVA03G27500
Oryza nivara
ONIVA03G27500
I
0.940
OS03G0624600
Oryza sativa
OS03G0624600
I
0.940
ORUFI03G27440
Oryza rufipogon
ORUFI03G27440
I
0.940
ORGLA03G0246300
Oryza glaberrima
ORGLA03G0246300
I
0.940
OMERI03G23890
Oryza meridionalis
OMERI03G23890
I
0.940
OBART03G26480
Oryza barthii
OBART03G26480
I
0.940
BGIOSGA013151
Oryza indica
BGIOSGA013151
I
0.940
Pavir.Ib03976
Panicum virgatum
Pavir.Ib03976
I
0.940
OGLUM03G27330
Oryza glumaepatula
OGLUM03G27330
I
0.940
Pavir.Ia01262
Panicum virgatum
Pavir.Ia01262
I
0.939
SapurV1A.1146s0010
Salix purpurea
SapurV1A.1146s0010
I
0.937
MDP0000246482
Malus domestica
MDP0000246482
I
0.937
TCM_012350
Theobroma cacao
TCM_012350
I
0.937
MDP0000153949
Malus domestica
MDP0000153949
I
0.937
Thhalv10021200m.g
Eutrema salsugineum
Thhalv10021200m.g
I
0.936
Bostr.26675s0262
Boechera stricta
Bostr.26675s0262
I
0.936
29974.m000235
Ricinus communis
29974.m000235
I
0.935
anac058
Vitis vinifera
VIT_17s0000g03660
I
0.935
Traes_4AL_B44DF4ACC
Triticum aestivum
Traes_4AL_B44DF4ACC
I
0.934
TRIUR3_27612
Triticum urartu
TRIUR3_27612
I
0.934
Bra022319
Brassica rapa
Bra022319
I
0.934
POPTR_0015s03700
Populus trichocarpa
POPTR_0015s03700
I
0.934
POPTR_0012s05280
Populus trichocarpa
POPTR_0012s05280
I
0.934
cassava9086.m1
Manihot esculenta
cassava9086.m1
I
0.934
MLOC_68284
Hordeum vulgare
MLOC_68284
I
0.934
Bo01320s020
Brassica oleracea
Bo01320s020
I
0.934
Bo3g071500
Brassica oleracea
Bo3g071500
I
0.934
Eucgr.B00724
Eucalyptus grandis
Eucgr.B00724
I
0.934
Ciclev10023578m.g
Citrus clementina
Ciclev10023578m.g
I
0.934
F775_05949
Aegilops tauschii
F775_05949
I
0.934
Bra001705
Brassica rapa
Bra001705
I
0.934
OB03G34470
Oryza brachyantha
OB03G34470
I
0.934
anac058
Arabidopsis thaliana
AT3G18400
D
0.933
anac058
Arabidopsis lyrata
Al_scaffold_0003_1942
I
0.933
BRADI1G14467
Brachypodium distachyon
BRADI1G14467
I
0.933
Traes_4BS_373BDBA94
Triticum aestivum
Traes_4BS_373BDBA94
I
0.933
evm.TU.supercontig_3.509
Carica papaya
evm.TU.supercontig_3.509
I
0.932
SapurV1A.1381s0050
Salix purpurea
SapurV1A.1381s0050
I
0.932
SapurV1A.1381s0060
Salix purpurea
SapurV1A.1381s0060
I
0.932
Bostr.19424s0822
Boechera stricta
Bostr.19424s0822
I
0.931
evm.TU.supercontig_244.7
Carica papaya
evm.TU.supercontig_244.7
I
0.931
SapurV1A.0719s0060
Salix purpurea
SapurV1A.0719s0060
I
0.931
28226.m000851
Ricinus communis
28226.m000851
I
0.931
Thhalv10011708m.g
Eutrema salsugineum
Thhalv10011708m.g
I
0.931
Cagra.1681s0009
Capsella grandiflora
Cagra.1681s0009
I
0.930
PRUPE_ppa025916mg
Prunus persica
PRUPE_ppa025916mg
I
0.929
MDP0000232008
Malus domestica
MDP0000232008
I
0.929
PK02366.1
Cannabis sativa
PK02366.1
I
0.929
Pm005091
Prunus mume
Pm005091
I
0.929
MDP0000690168
Malus domestica
MDP0000690168
I
0.929
Eucgr.C02105
Eucalyptus grandis
Eucgr.C02105
I
0.927
AMTR_s00079p00099620
Amborella trichopoda
AMTR_s00079p00099620
I
0.927
orange1.1g037591m.g
Citrus sinensis
orange1.1g037591m.g
I
0.926
Ciclev10008885m.g
Citrus clementina
Ciclev10008885m.g
I
0.926
cassava18338.valid.m1
Manihot esculenta
cassava18338.valid.m1
I
0.926
TCM_036791
Theobroma cacao
TCM_036791
I
0.926
Gorai.010G124100
Gossypium raimondii
Gorai.010G124100
I
0.926
ANAC039
Vitis vinifera
VIT_04s0008g02710
I
0.925
Carubv10015990m.g
Capsella rubella
Carubv10015990m.g
I
0.923
Lus10038937.g
Linum usitatissimum
Lus10038937.g
I
0.923
SapurV1A.1285s0100
Salix purpurea
SapurV1A.1285s0100
I
0.922
SapurV1A.1363s0020
Salix purpurea
SapurV1A.1363s0020
I
0.922
POPTR_0018s03910
Populus trichocarpa
POPTR_0018s03910
I
0.922
Bo1g117610
Brassica oleracea
Bo1g117610
I
0.921
Bra037585
Brassica rapa
Bra037585
I
0.921
cassava2919.m1
Manihot esculenta
cassava2919.m1
I
0.920
gene08765-v1.0-hybrid
Fragaria vesca
gene08765-v1.0-hybrid
I
0.920
Lus10027227.g
Linum usitatissimum
Lus10027227.g
I
0.919
MTR_3g109340
Medicago truncatula
MTR_3g109340
I
0.918
chr1.LjT35C22.60.nc
Lotus japonicus
chr1.LjT35C22.60.nc
I
0.915
POPTR_0006s29180
Populus trichocarpa
POPTR_0006s29180
I
0.915
Lus10020165.g
Linum usitatissimum
Lus10020165.g
I
0.914
Eucgr.K02225
Eucalyptus grandis
Eucgr.K02225
I
0.914
Aquca_018_00116
Aquilegia coerulea
Aquca_018_00116
I
0.912
SapurV1A.0263s0310
Salix purpurea
SapurV1A.0263s0310
I
0.911
mgf025158m
Mimulus guttatus
mgf025158m
I
0.911
GSMUA_Achr7G19680_001
Musa acuminata
GSMUA_Achr7G19680_001
I
0.909
Lus10026966.g
Linum usitatissimum
Lus10026966.g
I
0.907
Cla022572
Citrullus lanatus
Cla022572
I
0.904
Cucsa.161510
Cucumis sativus
Cucsa.161510
I
0.904
PGSC0003DMG400014845
Solanum tuberosum
PGSC0003DMG400014845
I
0.904
Bra003023
Brassica rapa
Bra003023
I
0.903
Lus10009669.g
Linum usitatissimum
Lus10009669.g
I
0.902
Lus10021659.g
Linum usitatissimum
Lus10021659.g
I
0.901
SapurV1A.0346s0160
Salix purpurea
SapurV1A.0346s0160
I
0.901
Lus10001648.g
Linum usitatissimum
Lus10001648.g
I
0.901
GLYMA14G20276
Glycine max
GLYMA14G20276
I
0.900
Lus10009029.g
Linum usitatissimum
Lus10009029.g
I
0.899
cassava17517.valid.m1
Manihot esculenta
cassava17517.valid.m1
I
0.898
30138.m004055
Ricinus communis
30138.m004055
I
0.898
GLYMA06G08440
Glycine max
GLYMA06G08440
I
0.897
SapurV1A.0377s0130
Salix purpurea
SapurV1A.0377s0130
I
0.897
POPTR_0012s01610
Populus trichocarpa
POPTR_0012s01610
I
0.897
ANAC038
Arabidopsis thaliana
AT2G24430
D
0.896
Bostr.27895s0039
Boechera stricta
Bostr.27895s0039
I
0.896
POPTR_0015s02170
Populus trichocarpa
POPTR_0015s02170
I
0.896
Bo8g099810
Brassica oleracea
Bo8g099810
I
0.896
Bra032095
Brassica rapa
Bra032095
I
0.896
Bra007855
Brassica rapa
Bra007855
I
0.896
ANAC039
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_4000352
I
0.896
Cagra.4091s0015
Capsella grandiflora
Cagra.4091s0015
I
0.896
Carubv10025508m.g
Capsella rubella
Carubv10025508m.g
I
0.896
MTR_4g108760
Medicago truncatula
MTR_4g108760
I
0.896
GLYMA04G08320
Glycine max
GLYMA04G08320
I
0.895
Thhalv10000520m.g
Eutrema salsugineum
Thhalv10000520m.g
I
0.894
gene26043-v1.0-hybrid
Fragaria vesca
gene26043-v1.0-hybrid
I
0.893
Solyc08g006020.2
Solanum lycopersicum
Solyc08g006020.2
I
0.891
orange1.1g017827m.g
Citrus sinensis
orange1.1g017827m.g
I
0.889
Ciclev10020480m.g
Citrus clementina
Ciclev10020480m.g
I
0.889
mgf021404m
Mimulus guttatus
mgf021404m
I
0.888
GSMUA_Achr8G21470_001
Musa acuminata
GSMUA_Achr8G21470_001
I
0.887
MTR_1g008740
Medicago truncatula
MTR_1g008740
I
0.881
Cla019391
Citrullus lanatus
Cla019391
I
0.880
PGSC0003DMG400033047
Solanum tuberosum
PGSC0003DMG400033047
I
0.879
GLYMA05G35090
Glycine max
GLYMA05G35090
N
0.879
Solyc06g069710.2
Solanum lycopersicum
Solyc06g069710.2
I
0.879
Cucsa.197830
Cucumis sativus
Cucsa.197830
I
0.879
Bo4g154590
Brassica oleracea
Bo4g154590
I
0.878
PGSC0003DMG400029593
Solanum tuberosum
PGSC0003DMG400029593
I
0.878
cassava46147.m1
Manihot esculenta
cassava46147.m1
I
0.878
GLYMA08G04610
Glycine max
GLYMA08G04610
N
0.877
Solyc03g115850.2
Solanum lycopersicum
Solyc03g115850.2
I
0.876
Ca_11021
Cicer arietinum
Ca_11021
I
0.873
Solyc08g074300.2
Solanum lycopersicum
Solyc08g074300.2
I
0.873
AMTR_s00025p00174590
Amborella trichopoda
AMTR_s00025p00174590
I
0.873
orange1.1g047710m.g
Citrus sinensis
orange1.1g047710m.g
I
0.872
Ciclev10008619m.g
Citrus clementina
Ciclev10008619m.g
I
0.872
PGSC0003DMG400019523
Solanum tuberosum
PGSC0003DMG400019523
I
0.871