CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_020125
(
Theobroma cacao
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
TCM_020125
T295952_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.874
0.360
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.874
0.360
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY
RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.874
0.360
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY05002
NAC/NAM
3
128
STGFRFNPTDEELIEILIEKVSGNITMSFDFIVERNIYELEPQNLQWIQSVALNNNERYYYCKREGDSREVSGRGWWKATSHVKTISANGRVVGYKRPLTFHRFRDNERKRKGAIKTDWIMHEYAL
Links
Other
NAC/NAM
family TFs
Other
Theobroma cacao
TFs
71 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_020121
Theobroma cacao
TCM_020121
I
0.991
TCM_020127
Theobroma cacao
TCM_020127
N
0.988
GSMUA_Achr4G32010_001
Musa acuminata
GSMUA_Achr4G32010_001
I
0.931
BRADI4G37327
Brachypodium distachyon
BRADI4G37327
I
0.922
Pavir.Ba01386
Panicum virgatum
Pavir.Ba01386
I
0.915
Pavir.Bb02626
Panicum virgatum
Pavir.Bb02626
I
0.915
Sb02g032230
Sorghum bicolor
Sb02g032230
I
0.915
OGLUM09G19480
Oryza glumaepatula
OGLUM09G19480
I
0.914
BGIOSGA031230
Oryza indica
BGIOSGA031230
I
0.914
ONIVA09G20130
Oryza nivara
ONIVA09G20130
I
0.914
OB09G25590
Oryza brachyantha
OB09G25590
I
0.914
LPERR09G14720
Leersia perrieri
LPERR09G14720
I
0.914
OMERI09G14170
Oryza meridionalis
OMERI09G14170
I
0.914
ORGLA09G0151800
Oryza glaberrima
ORGLA09G0151800
I
0.914
Si032702m.g
Setaria italica
Si032702m.g
I
0.913
evm.TU.contig_29561
Carica papaya
evm.TU.contig_29561
I
0.911
Eucgr.K02303
Eucalyptus grandis
Eucgr.K02303
I
0.911
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
0.910
GSMUA_Achr11G16860_001
Musa acuminata
GSMUA_Achr11G16860_001
I
0.908
Si022714m.g
Setaria italica
Si022714m.g
I
0.908
F775_13961
Aegilops tauschii
F775_13961
I
0.907
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
0.905
Thhalv10012158m.g
Eutrema salsugineum
Thhalv10012158m.g
I
0.904
AMTR_s00018p00071850
Amborella trichopoda
AMTR_s00018p00071850
I
0.902
GSMUA_Achr9G10040_001
Musa acuminata
GSMUA_Achr9G10040_001
I
0.902
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
0.901
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
0.901
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
0.901
MLOC_37843
Hordeum vulgare
MLOC_37843
I
0.901
Si036303m.g
Setaria italica
Si036303m.g
I
0.895
GSMUA_Achr6G31580_001
Musa acuminata
GSMUA_Achr6G31580_001
I
0.895
Si022723m.g
Setaria italica
Si022723m.g
I
0.895
ANAC040
Arabidopsis lyrata
fgenesh2_kg.4__689__AT2G27300.1
I
0.893
Pavir.Cb00167
Panicum virgatum
Pavir.Cb00167
I
0.892
Pavir.Ib01528
Panicum virgatum
Pavir.Ib01528
I
0.890
e_gw1.140.53.1
Physcomitrella patens
e_gw1.140.53.1
I
0.888
Cla011742
Citrullus lanatus
Cla011742
I
0.887
Aquca_014_00255
Aquilegia coerulea
Aquca_014_00255
I
0.887
Sb08g022560
Sorghum bicolor
Sb08g022560
I
0.887
Bostr.0556s0555
Boechera stricta
Bostr.0556s0555
I
0.887
Aquca_009_00966
Aquilegia coerulea
Aquca_009_00966
I
0.887
Cagra.27691s0001
Capsella grandiflora
Cagra.27691s0001
I
0.886
Bo5g002830
Brassica oleracea
Bo5g002830
N
0.885
GSMUA_Achr4G02390_001
Musa acuminata
GSMUA_Achr4G02390_001
I
0.885
GSMUA_Achr7G21780_001
Musa acuminata
GSMUA_Achr7G21780_001
I
0.885
Ca_13571
Cicer arietinum
Ca_13571
I
0.884
SapurV1A.3767s0010
Salix purpurea
SapurV1A.3767s0010
I
0.881
Bra034719
Brassica rapa
Bra034719
I
0.880
mgf013201m
Mimulus guttatus
mgf013201m
I
0.879
SapurV1A.0740s0040
Salix purpurea
SapurV1A.0740s0040
I
0.877
SapurV1A.0365s0200
Salix purpurea
SapurV1A.0365s0200
I
0.877
gw1.6.394.1
Physcomitrella patens
gw1.6.394.1
I
0.876
ATAF1
Arabidopsis lyrata
scaffold_100066.1
I
0.876
Gorai.005G088800
Gossypium raimondii
Gorai.005G088800
I
0.875
fgenesh1_pg.scaffold_182000024
Physcomitrella patens
fgenesh1_pg.scaffold_182000024
I
0.875
MLOC_65286
Hordeum vulgare
MLOC_65286
I
0.875
NAC002
Arabidopsis thaliana
AT1G01720
D
0.874
anac032
Vitis vinifera
VIT_18s0001g02300
I
0.874
Thhalv10002027m.g
Eutrema salsugineum
Thhalv10002027m.g
I
0.874
Bo5g001100
Brassica oleracea
Bo5g001100
I
0.874
Cagra.1968s0112
Capsella grandiflora
Cagra.1968s0112
I
0.874
Bra033239
Brassica rapa
Bra033239
I
0.874
Bostr.5325s0094
Boechera stricta
Bostr.5325s0094
I
0.874
Carubv10009926m.g
Capsella rubella
Carubv10009926m.g
I
0.874
e_gw1.164.18.1
Physcomitrella patens
e_gw1.164.18.1
I
0.874
GSMUA_Achr10G08120_001
Musa acuminata
GSMUA_Achr10G08120_001
I
0.873
cassava28909.valid.m1
Manihot esculenta
cassava28909.valid.m1
I
0.873
GLYMA14G24220
Glycine max
GLYMA14G24220
I
0.872
Gorai.010G051900
Gossypium raimondii
Gorai.010G051900
I
0.871
MTR_2g068920
Medicago truncatula
MTR_2g068920
I
0.871
TCM_035160
Theobroma cacao
TCM_035160
I
0.871