CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_043360
(
Theobroma cacao
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
TCM_043360
T296009_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC078
M02372_2.00
Arabidopsis thaliana
NNRCAMGHMANN
NNTKDCKTGYNN
PBM
Weirauch et al.(2014)
pTH7209
0.913
0.867
NAC078
M07226_2.00
Arabidopsis thaliana
TTDCTTGNDNNDCAAG
CTTGHNNHNCAAGHAA
Dap-seq
OMalley et al.(2016)
NAC2_colamp_a
0.913
0.867
NAC078
M07227_2.00
Arabidopsis thaliana
DTTWCTTGNNNNRCAAG
CTTGYNNNNCAAGWAAH
Dap-seq
OMalley et al.(2016)
NAC2_col_v3a
0.913
0.867
NAC078
M11083_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC078_Q2
0.913
0.867
NAC053
M07202_2.00
Arabidopsis thaliana
TTWCTTGNNNVRCAAG
CTTGYBNNNCAAGWAA
Dap-seq
OMalley et al.(2016)
ANAC053_colamp_a
0.899
0.858
NAC053
M07203_2.00
Arabidopsis thaliana
TTWCTTGNNNVRCAAGH
DCTTGYBNNNCAAGWAA
Dap-seq
OMalley et al.(2016)
ANAC053_col
0.899
0.858
NAC053
M11079_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G10500_Q2
0.899
0.858
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY18860
NAC/NAM
10
135
APGFRFHPTDEELVRYYLKRKVLNKPSFDAISVVDVYRSEPWDLPDKSKLKSRDLEWYFFSALDKKYGNGSRTNRATERGYWKTTGKDRPIRYRERVVGMKKTLVYHKGRAPRGERTNWVMHEYRL
EOY18861
NAC/NAM
10
135
APGFRFHPTDEELVRYYLKRKVLNKPSFDAISVVDVYRSEPWDLPDKSKLKSRDLEWYFFSALDKKYGNGSRTNRATERGYWKTTGKDRPIRYRERVVGMKKTLVYHKGRAPRGERTNWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Theobroma cacao
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0008s03170
Populus trichocarpa
POPTR_0008s03170
I
0.933
POPTR_0010s23650
Populus trichocarpa
POPTR_0010s23650
I
0.932
SapurV1A.0213s0330
Salix purpurea
SapurV1A.0213s0330
I
0.932
28872.m000248
Ricinus communis
28872.m000248
I
0.931
cassava22911.valid.m1
Manihot esculenta
cassava22911.valid.m1
I
0.929
Cucsa.308770
Cucumis sativus
Cucsa.308770
I
0.923
Cla020837
Citrullus lanatus
Cla020837
I
0.923
Ciclev10031147m.g
Citrus clementina
Ciclev10031147m.g
I
0.920
orange1.1g007598m.g
Citrus sinensis
orange1.1g007598m.g
I
0.920
PK11467.1
Cannabis sativa
PK11467.1
I
0.918
Bra028790
Brassica rapa
Bra028790
I
0.914
Bostr.2128s0007
Boechera stricta
Bostr.2128s0007
I
0.913
NAC2
Arabidopsis lyrata
scaffold_600382.1
I
0.913
NAC078
Arabidopsis thaliana
AT5G04410
D
0.913
Pm017550
Prunus mume
Pm017550
I
0.912
PRUPE_ppa003239mg
Prunus persica
PRUPE_ppa003239mg
I
0.912
Bra009456
Brassica rapa
Bra009456
I
0.910
Bo9g180050
Brassica oleracea
Bo9g180050
I
0.909
MDP0000457996
Malus domestica
MDP0000457996
I
0.909
MDP0000695714
Malus domestica
MDP0000695714
I
0.909
Thhalv10013110m.g
Eutrema salsugineum
Thhalv10013110m.g
I
0.908
Bra005804
Brassica rapa
Bra005804
I
0.908
Cagra.9217s0021
Capsella grandiflora
Cagra.9217s0021
I
0.904
Bo3g002800
Brassica oleracea
Bo3g002800
I
0.902
Cucsa.186150
Cucumis sativus
Cucsa.186150
I
0.901
Cla013942
Citrullus lanatus
Cla013942
I
0.901
Carubv10013370m.g
Capsella rubella
Carubv10013370m.g
I
0.900
Gorai.009G309000
Gossypium raimondii
Gorai.009G309000
I
0.900
Cagra.0834s0027
Capsella grandiflora
Cagra.0834s0027
I
0.900
anac053
Arabidopsis lyrata
fgenesh2_kg.3__1085__AT3G10500.1
I
0.899
Bostr.22252s0010
Boechera stricta
Bostr.22252s0010
I
0.899
NAC053
Arabidopsis thaliana
AT3G10500
D
0.899
Thhalv10020438m.g
Eutrema salsugineum
Thhalv10020438m.g
I
0.898
SapurV1A.0394s0050
Salix purpurea
SapurV1A.0394s0050
I
0.898
Bo1g143830
Brassica oleracea
Bo1g143830
I
0.895
Bra034120
Brassica rapa
Bra034120
I
0.891
GLYMA20G33390
Glycine max
GLYMA20G33390
N
0.881
Lus10017458.g
Linum usitatissimum
Lus10017458.g
I
0.877