CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_043360
(
Theobroma cacao
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
TCM_043360
T296009_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC078
M02372_2.00
Arabidopsis thaliana
NNRCAMGHMANN
NNTKDCKTGYNN
PBM
Weirauch et al.(2014)
pTH7209
0.913
0.867
NAC078
M07226_2.00
Arabidopsis thaliana
TTDCTTGNDNNDCAAG
CTTGHNNHNCAAGHAA
Dap-seq
OMalley et al.(2016)
NAC2_colamp_a
0.913
0.867
NAC078
M07227_2.00
Arabidopsis thaliana
DTTWCTTGNNNNRCAAG
CTTGYNNNNCAAGWAAH
Dap-seq
OMalley et al.(2016)
NAC2_col_v3a
0.913
0.867
NAC078
M11083_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$NAC078_Q2
0.913
0.867
NAC053
M07202_2.00
Arabidopsis thaliana
TTWCTTGNNNVRCAAG
CTTGYBNNNCAAGWAA
Dap-seq
OMalley et al.(2016)
ANAC053_colamp_a
0.899
0.858
NAC053
M07203_2.00
Arabidopsis thaliana
TTWCTTGNNNVRCAAGH
DCTTGYBNNNCAAGWAA
Dap-seq
OMalley et al.(2016)
ANAC053_col
0.899
0.858
NAC053
M11079_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G10500_Q2
0.899
0.858
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY18860
NAC/NAM
10
135
APGFRFHPTDEELVRYYLKRKVLNKPSFDAISVVDVYRSEPWDLPDKSKLKSRDLEWYFFSALDKKYGNGSRTNRATERGYWKTTGKDRPIRYRERVVGMKKTLVYHKGRAPRGERTNWVMHEYRL
EOY18861
NAC/NAM
10
135
APGFRFHPTDEELVRYYLKRKVLNKPSFDAISVVDVYRSEPWDLPDKSKLKSRDLEWYFFSALDKKYGNGSRTNRATERGYWKTTGKDRPIRYRERVVGMKKTLVYHKGRAPRGERTNWVMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Theobroma cacao
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy