CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla004358
(
Citrullus lanatus
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Cla004358
T296537_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC054
M07205_2.00
Arabidopsis thaliana
CKTVHNNHRCACGYHANCW
WGNTDRCGTGYDNNDBAMG
Dap-seq
OMalley et al.(2016)
CUC1_colamp_a
0.892
0.851
NAC054
M07206_2.00
Arabidopsis thaliana
TWNCKTGHNNNDCAMG
CKTGHNNNDCAMGNWA
Dap-seq
OMalley et al.(2016)
CUC1_col_v31
0.892
0.851
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla004358
NAC/NAM
8
134
PPGFRFHPTDEELIGHYLLKKVLNFHFSSPAIAHVDLNKSEPWDLPEKALMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIMSSKTNSLIGMKKTLVFYKGRAPKGQKSNWVMHEFRL
Links
Other
NAC/NAM
family TFs
Other
Citrullus lanatus
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cucsa.032500
Cucumis sativus
Cucsa.032500
I
0.970
Cucsa.158180
Cucumis sativus
Cucsa.158180
I
0.920
Cagra.0007s0060
Capsella grandiflora
Cagra.0007s0060
I
0.892
NAC054
Arabidopsis thaliana
AT3G15170
D
0.892
Thhalv10021186m.g
Eutrema salsugineum
Thhalv10021186m.g
I
0.892
Bostr.28625s0180
Boechera stricta
Bostr.28625s0180
I
0.892
Carubv10014276m.g
Capsella rubella
Carubv10014276m.g
I
0.892
Bo3g066690
Brassica oleracea
Bo3g066690
I
0.892
CUC1
Arabidopsis lyrata
fgenesh2_kg.3__1650__AT3G15170.1
I
0.892
Bra001586
Brassica rapa
Bra001586
I
0.892
Bo1g129730
Brassica oleracea
Bo1g129730
I
0.891
Bra021592
Brassica rapa
Bra021592
I
0.891
GLYMA12G35530
Glycine max
GLYMA12G35530
I
0.891
GLYMA13G34950
Glycine max
GLYMA13G34950
I
0.891
MTR_2g078700
Medicago truncatula
MTR_2g078700
I
0.886
Cla023717
Citrullus lanatus
Cla023717
I
0.885
Ca_22532
Cicer arietinum
Ca_22532
I
0.884
VIT_19s0014g02200
Vitis vinifera
VIT_19s0014g02200
I
0.884
Cucsa.122890
Cucumis sativus
Cucsa.122890
I
0.883
LjSGA_071377.1
Lotus japonicus
LjSGA_071377.1
I
0.881
GLYMA06G35660
Glycine max
GLYMA06G35660
I
0.879
GLYMA12G26190
Glycine max
GLYMA12G26190
I
0.879
mgf003818m
Mimulus guttatus
mgf003818m
I
0.878
Aquca_033_00035
Aquilegia coerulea
Aquca_033_00035
I
0.872
gene00971-v1.0-hybrid
Fragaria vesca
gene00971-v1.0-hybrid
I
0.871