CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla004701
(
Citrullus lanatus
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Cla004701
T296539_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC010
M07167_2.00
Arabidopsis thaliana
NWWNCTTSWNNNWYAMGHHWYH
DRWDDCKTRWNNNWSAAGNWWN
Dap-seq
OMalley et al.(2016)
SND3_colamp_a
0.912
0.561
NAC010
M07168_2.00
Arabidopsis thaliana
CKTSWNNNWYAMGYW
WRCKTRWNNNWSAMG
Dap-seq
OMalley et al.(2016)
SND3_col_b
0.912
0.561
NAC073
M07221_2.00
Arabidopsis thaliana
CTTSWNNNWYAMGYH
DRCKTRWNNNWSAAG
Dap-seq
OMalley et al.(2016)
SND2_col_a
0.889
0.596
NAC073
M07222_2.00
Arabidopsis thaliana
CKTSWNNNWYACGYW
WRCGTRWNNNWSAMG
Dap-seq
OMalley et al.(2016)
SND2_colamp_a
0.889
0.596
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla004701
NAC/NAM
37
178
PAGVKFDPTDEEIMEHLAAKCTVGNLKPHALIDEFIPTLETDQGICYTHPENLPGVSKDGNDVHFFHKTSNAYSTGQRKRRKIESEHNSSLEHFRWHKTGKTKAVIENGVHKGWKKIFSLYRSSKGGSKPQKSNWVIHQYHL
Links
Other
NAC/NAM
family TFs
Other
Citrullus lanatus
TFs
246 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy