28872.m000248 (Ricinus communis)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 28872.m000248 T296734_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC078
M02372_2.00 		Arabidopsis thaliana
NNRCAMGHMANN
NNTKDCKTGYNN		 PBM
Weirauch et al.(2014)
pTH7209 		0.938 0.912
NAC078
M07226_2.00 		Arabidopsis thaliana
TTDCTTGNDNNDCAAG
CTTGHNNHNCAAGHAA		 Dap-seq
OMalley et al.(2016)
NAC2_colamp_a 		0.938 0.912
NAC078
M07227_2.00 		Arabidopsis thaliana
DTTWCTTGNNNNRCAAG
CTTGYNNNNCAAGWAAH		 Dap-seq
OMalley et al.(2016)
NAC2_col_v3a 		0.938 0.912
NAC078
M11083_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$NAC078_Q2 		0.938 0.912
NAC053
M07202_2.00 		Arabidopsis thaliana
TTWCTTGNNNVRCAAG
CTTGYBNNNCAAGWAA		 Dap-seq
OMalley et al.(2016)
ANAC053_colamp_a 		0.927 0.877
NAC053
M07203_2.00 		Arabidopsis thaliana
TTWCTTGNNNVRCAAGH
DCTTGYBNNNCAAGWAA		 Dap-seq
OMalley et al.(2016)
ANAC053_col 		0.927 0.877
NAC053
M11079_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G10500_Q2 		0.927 0.877
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
28872.m000248 NAC/NAM 12 138

Links

Other NAC/NAM family TFs
Other Ricinus communis TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava22911.valid.m1 Manihot esculenta cassava22911.valid.m1 I 0.962
POPTR_0008s03170 Populus trichocarpa POPTR_0008s03170 I 0.956
SapurV1A.0213s0330 Salix purpurea SapurV1A.0213s0330 I 0.951
POPTR_0010s23650 Populus trichocarpa POPTR_0010s23650 I 0.951
Cucsa.308770 Cucumis sativus Cucsa.308770 I 0.948
PRUPE_ppa003239mg Prunus persica PRUPE_ppa003239mg I 0.948
Pm017550 Prunus mume Pm017550 I 0.948
Cla020837 Citrullus lanatus Cla020837 I 0.948
Ciclev10031147m.g Citrus clementina Ciclev10031147m.g I 0.944
MDP0000695714 Malus domestica MDP0000695714 I 0.944
orange1.1g007598m.g Citrus sinensis orange1.1g007598m.g I 0.944
MDP0000457996 Malus domestica MDP0000457996 I 0.944
NAC2 Arabidopsis lyrata scaffold_600382.1 I 0.938
Bostr.2128s0007 Boechera stricta Bostr.2128s0007 I 0.938
Bo9g180050 Brassica oleracea Bo9g180050 I 0.938
PK11467.1 Cannabis sativa PK11467.1 I 0.938
Bra009456 Brassica rapa Bra009456 I 0.938
NAC078 Arabidopsis thaliana AT5G04410 D 0.938
Bra028790 Brassica rapa Bra028790 I 0.937
Thhalv10013110m.g Eutrema salsugineum Thhalv10013110m.g I 0.934
Bra005804 Brassica rapa Bra005804 I 0.933
TCM_043360 Theobroma cacao TCM_043360 I 0.931
Cagra.9217s0021 Capsella grandiflora Cagra.9217s0021 I 0.931
Bo3g002800 Brassica oleracea Bo3g002800 I 0.929
SapurV1A.0394s0050 Salix purpurea SapurV1A.0394s0050 I 0.927
Bostr.22252s0010 Boechera stricta Bostr.22252s0010 I 0.927
NAC053 Arabidopsis thaliana AT3G10500 D 0.927
anac053 Arabidopsis lyrata fgenesh2_kg.3__1085__AT3G10500.1 I 0.927
Carubv10013370m.g Capsella rubella Carubv10013370m.g I 0.923
Thhalv10020438m.g Eutrema salsugineum Thhalv10020438m.g I 0.923
Cagra.0834s0027 Capsella grandiflora Cagra.0834s0027 I 0.923
Lus10017458.g Linum usitatissimum Lus10017458.g I 0.921
Bo1g143830 Brassica oleracea Bo1g143830 I 0.920
Cucsa.186150 Cucumis sativus Cucsa.186150 I 0.920
Cla013942 Citrullus lanatus Cla013942 I 0.920
Bra034120 Brassica rapa Bra034120 I 0.917
Lus10028824.g Linum usitatissimum Lus10028824.g N 0.915
Aquca_030_00013 Aquilegia coerulea Aquca_030_00013 I 0.914
GLYMA20G33390 Glycine max GLYMA20G33390 N 0.905
MTR_1g090720 Medicago truncatula MTR_1g090720 I 0.899
GLYMA20G33430 Glycine max GLYMA20G33430 I 0.898
GLYMA10G34130 Glycine max GLYMA10G34130 I 0.898
Ca_08371 Cicer arietinum Ca_08371 I 0.897
chr5.CM0909.750.nc Lotus japonicus chr5.CM0909.750.nc I 0.895
Cucsa.308760 Cucumis sativus Cucsa.308760 I 0.888
chr5.CM0909.760.nc Lotus japonicus chr5.CM0909.760.nc N 0.884
Cla020838 Citrullus lanatus Cla020838 I 0.881
PK06477.1 Cannabis sativa PK06477.1 I 0.878
Gorai.009G309000 Gossypium raimondii Gorai.009G309000 I 0.872