CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava34069.m1
(
Manihot esculenta
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
cassava34069.m1
T296893_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
JUB1
M07191_2.00
Arabidopsis thaliana
YKCCGTNNNNNHNMCGBHRY
RYDVCGKNDNNNNNACGGMR
Dap-seq
OMalley et al.(2016)
ANAC042_col_a
0.952
0.833
ANAC094
M07236_2.00
Arabidopsis thaliana
YDCCGTNNNNNHNACGBH
DVCGTNDNNNNNACGGHR
Dap-seq
OMalley et al.(2016)
ANAC094_col_a
0.903
0.737
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava34069.m1
NAC/NAM
12
140
LPGFRFHPTDEELVGFYLRRKVDKKPLSIELIKQVDIYKYDPWDLPKPSSVGEKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGRDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRL
Links
Other
NAC/NAM
family TFs
Other
Manihot esculenta
TFs
280 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy