CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava4621.m1
(
Manihot esculenta
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
cassava4621.m1
T296926_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BRN2
M07217_2.00
Arabidopsis thaliana
CKTVHDNNNYAMGYWA
TWRCKTRNNNHDBAMG
Dap-seq
OMalley et al.(2016)
ANAC070_colamp_a
0.961
0.912
BRN2
M07218_2.00
Arabidopsis thaliana
TWDCKTVHDNHDYAMGYWAHH
DDTWRCKTRHDNHDBAMGHWA
Dap-seq
OMalley et al.(2016)
ANAC070_col
0.961
0.912
SMB
M07184_2.00
Arabidopsis thaliana
TWNCKTVHDNHNYAMGYWAYH
DRTWRCKTRNDNHDBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_col_a
0.894
0.807
SMB
M07185_2.00
Arabidopsis thaliana
TWNCKTVNNNNNYAMG
CKTRNNNNNBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_colamp_a
0.894
0.807
MDP0000762302
M02383_2.00
Malus domestica
NNNAMKHNWN
NWNDMKTNNN
PBM
Weirauch et al.(2014)
pTH9205
0.886
0.789
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava4621.m1
NAC/NAM
11
138
PPGFRFHPTDEEMLHYYLKKKVSFQRFDMEVIKEVDLNKVEPWELQERCKIGSTPQNECYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNSFKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Manihot esculenta
TFs
154 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10039153.g
Linum usitatissimum
Lus10039153.g
I
0.965
Lus10013782.g
Linum usitatissimum
Lus10013782.g
I
0.965
Gorai.004G267300
Gossypium raimondii
Gorai.004G267300
I
0.965
Ciclev10024588m.g
Citrus clementina
Ciclev10024588m.g
I
0.965
orange1.1g042376m.g
Citrus sinensis
orange1.1g042376m.g
I
0.965
MDP0000558493
Malus domestica
MDP0000558493
I
0.964
gene31175-v1.0-hybrid
Fragaria vesca
gene31175-v1.0-hybrid
I
0.964
PRUPE_ppa026376mg
Prunus persica
PRUPE_ppa026376mg
I
0.964
GLYMA09G36820
Glycine max
GLYMA09G36820
I
0.964
29382.m000084
Ricinus communis
29382.m000084
I
0.964
Pm022820
Prunus mume
Pm022820
I
0.964
VIT_18s0089g01120
Vitis vinifera
VIT_18s0089g01120
I
0.964
Eucgr.F04097
Eucalyptus grandis
Eucgr.F04097
I
0.963
Cla012576
Citrullus lanatus
Cla012576
I
0.963
Cucsa.237820
Cucumis sativus
Cucsa.237820
I
0.963
MTR_4g035590
Medicago truncatula
MTR_4g035590
I
0.962
Ca_15792
Cicer arietinum
Ca_15792
I
0.962
MDP0000257674
Malus domestica
MDP0000257674
I
0.962
Bra037914
Brassica rapa
Bra037914
I
0.961
Bo9g088300
Brassica oleracea
Bo9g088300
I
0.961
BRN2
Arabidopsis thaliana
AT4G10350
D
0.961
ANAC070
Arabidopsis lyrata
Al_scaffold_0006_3164
I
0.961
Thhalv10029403m.g
Eutrema salsugineum
Thhalv10029403m.g
I
0.961
Aquca_014_00032
Aquilegia coerulea
Aquca_014_00032
I
0.960
TCM_036034
Theobroma cacao
TCM_036034
I
0.959
Cagra.6133s0030
Capsella grandiflora
Cagra.6133s0030
I
0.959
Carubv10010920m.g
Capsella rubella
Carubv10010920m.g
I
0.959
GLYMA12G00540
Glycine max
GLYMA12G00540
I
0.959
Bostr.3359s0042
Boechera stricta
Bostr.3359s0042
I
0.958
ANAC015
Arabidopsis lyrata
fgenesh2_kg.1__3458__AT1G33280.1
I
0.958
BRN1
Arabidopsis thaliana
AT1G33280
I
0.958
Carubv10003879m.g
Capsella rubella
Carubv10003879m.g
I
0.957
Bostr.25463s0283
Boechera stricta
Bostr.25463s0283
I
0.957
Cagra.12686s0005
Capsella grandiflora
Cagra.12686s0005
I
0.957
Pavir.J07268
Panicum virgatum
Pavir.J07268
I
0.956
Pavir.Gb01599
Panicum virgatum
Pavir.Gb01599
I
0.956
Si012319m.g
Setaria italica
Si012319m.g
I
0.956
Thhalv10008226m.g
Eutrema salsugineum
Thhalv10008226m.g
I
0.956
AMTR_s00099p00131560
Amborella trichopoda
AMTR_s00099p00131560
I
0.956
OB04G21050
Oryza brachyantha
OB04G21050
I
0.956
OGLUM04G13590
Oryza glumaepatula
OGLUM04G13590
I
0.956
Sb06g017720
Sorghum bicolor
Sb06g017720
I
0.956
BGIOSGA015018
Oryza indica
BGIOSGA015018
I
0.955
BGIOSGA034998
Oryza indica
BGIOSGA034998
I
0.955
Bra000709
Brassica rapa
Bra000709
I
0.955
ONIVA04G12040
Oryza nivara
ONIVA04G12040
I
0.955
GRMZM2G099144
Zea mays
GRMZM2G099144
I
0.955
OLONG_020428
Oryza longistaminata
OLONG_020428
I
0.955
OBART04G13830
Oryza barthii
OBART04G13830
I
0.955
ORUFI04G15090
Oryza rufipogon
ORUFI04G15090
I
0.954
Traes_2BL_209C14A8F
Triticum aestivum
Traes_2BL_209C14A8F
I
0.953
Traes_2AL_F0B17F0EA
Triticum aestivum
Traes_2AL_F0B17F0EA
I
0.953
MLOC_19175
Hordeum vulgare
MLOC_19175
I
0.953
Traes_2DL_70F83D4B9
Triticum aestivum
Traes_2DL_70F83D4B9
I
0.953
F775_23174
Aegilops tauschii
F775_23174
I
0.953
BRADI5G11247
Brachypodium distachyon
BRADI5G11247
I
0.953
GSMUA_Achr6G28890_001
Musa acuminata
GSMUA_Achr6G28890_001
I
0.950
GRMZM2G435824
Zea mays
GRMZM2G435824
I
0.950
TRIUR3_28259
Triticum urartu
TRIUR3_28259
I
0.949
Solyc06g063430.1
Solanum lycopersicum
Solyc06g063430.1
I
0.948
POPTR_0013s09280
Populus trichocarpa
POPTR_0013s09280
I
0.946
mgf017656m
Mimulus guttatus
mgf017656m
I
0.944
SapurV1A.1219s0030
Salix purpurea
SapurV1A.1219s0030
I
0.944
POPTR_0019s09400
Populus trichocarpa
POPTR_0019s09400
I
0.926
SapurV1A.0907s0070
Salix purpurea
SapurV1A.0907s0070
I
0.922
GSMUA_Achr2G05640_001
Musa acuminata
GSMUA_Achr2G05640_001
I
0.912
gene19898-v1.0-hybrid
Fragaria vesca
gene19898-v1.0-hybrid
I
0.909
29725.m000235
Ricinus communis
29725.m000235
I
0.908
Gorai.004G268500
Gossypium raimondii
Gorai.004G268500
I
0.908
Pm010886
Prunus mume
Pm010886
I
0.908
TCM_033728
Theobroma cacao
TCM_033728
I
0.908
PRUPE_ppa025341mg
Prunus persica
PRUPE_ppa025341mg
I
0.908
Ca_13929
Cicer arietinum
Ca_13929
I
0.908
PK10271.1
Cannabis sativa
PK10271.1
I
0.907
MDP0000652584
Malus domestica
MDP0000652584
I
0.904
cassava32687.m1
Manihot esculenta
cassava32687.m1
I
0.904
MDP0000501518
Malus domestica
MDP0000501518
I
0.904
GLYMA08G17140
Glycine max
GLYMA08G17140
I
0.904
MTR_2g062730
Medicago truncatula
MTR_2g062730
I
0.904
LjSGA_059487.1
Lotus japonicus
LjSGA_059487.1
I
0.904
SMB
Vitis vinifera
VIT_19s0085g01210
I
0.903
Bra003602
Brassica rapa
Bra003602
I
0.902
PGSC0003DMG400009665
Solanum tuberosum
PGSC0003DMG400009665
I
0.901
Solyc12g017400.1
Solanum lycopersicum
Solyc12g017400.1
I
0.901
GLYMA15G42050
Glycine max
GLYMA15G42050
I
0.899
Cla005561
Citrullus lanatus
Cla005561
I
0.898
Bostr.20129s0396
Boechera stricta
Bostr.20129s0396
I
0.894
Bo6g080930
Brassica oleracea
Bo6g080930
I
0.894
Thhalv10019534m.g
Eutrema salsugineum
Thhalv10019534m.g
I
0.894
SMB
Arabidopsis thaliana
AT1G79580
D
0.894
SMB
Arabidopsis lyrata
scaffold_202942.1
I
0.894
Carubv10020504m.g
Capsella rubella
Carubv10020504m.g
I
0.894
Cagra.1725s0032
Capsella grandiflora
Cagra.1725s0032
I
0.894
Bo6g123980
Brassica oleracea
Bo6g123980
I
0.893
mg017416m
Mimulus guttatus
mg017416m
I
0.893
Bra035127
Brassica rapa
Bra035127
I
0.893
SapurV1A.0093s0460
Salix purpurea
SapurV1A.0093s0460
I
0.892
POPTR_0008s07950
Populus trichocarpa
POPTR_0008s07950
I
0.892
POPTR_0010s18420
Populus trichocarpa
POPTR_0010s18420
I
0.892
cassava39971.m1
Manihot esculenta
cassava39971.m1
I
0.892
SapurV1A.0164s0070
Salix purpurea
SapurV1A.0164s0070
I
0.892
Gorai.008G259700
Gossypium raimondii
Gorai.008G259700
I
0.892
Bo2g095440
Brassica oleracea
Bo2g095440
I
0.890
Sb10g020860
Sorghum bicolor
Sb10g020860
I
0.887
GRMZM2G041746
Zea mays
GRMZM2G041746
I
0.887
GRMZM2G104074
Zea mays
GRMZM2G104074
I
0.887
Pavir.Ab01037
Panicum virgatum
Pavir.Ab01037
I
0.886
Pavir.Aa02770
Panicum virgatum
Pavir.Aa02770
I
0.886
MDP0000762302
Malus domestica
MDP0000762302
D
0.886
Si017641m.g
Setaria italica
Si017641m.g
I
0.886
MDP0000140229
Malus domestica
MDP0000140229
I
0.886
BRADI1G38730
Brachypodium distachyon
BRADI1G38730
I
0.884
PK22182.1
Cannabis sativa
PK22182.1
I
0.884
TRIUR3_14210
Triticum urartu
TRIUR3_14210
I
0.883
F775_42361
Aegilops tauschii
F775_42361
I
0.883
MLOC_17128
Hordeum vulgare
MLOC_17128
I
0.883
Traes_7AL_46F73E667
Triticum aestivum
Traes_7AL_46F73E667
I
0.883
Traes_7DL_AD6EAD1A61
Triticum aestivum
Traes_7DL_AD6EAD1A61
I
0.883
Traes_7DL_AD6EAD1A6
Triticum aestivum
Traes_7DL_AD6EAD1A6
I
0.883
Pavir.Da01009
Panicum virgatum
Pavir.Da01009
I
0.882
SapurV1A.0131s0060
Salix purpurea
SapurV1A.0131s0060
I
0.882
Si007822m.g
Setaria italica
Si007822m.g
I
0.882
Sb04g009180
Sorghum bicolor
Sb04g009180
I
0.882
POPTR_0011s15640
Populus trichocarpa
POPTR_0011s15640
I
0.882
Pavir.J05053
Panicum virgatum
Pavir.J05053
I
0.882
Bra008423
Brassica rapa
Bra008423
I
0.882
Eucgr.E01053
Eucalyptus grandis
Eucgr.E01053
I
0.882
Lus10030143.g
Linum usitatissimum
Lus10030143.g
I
0.882
Cucsa.240210
Cucumis sativus
Cucsa.240210
I
0.882
BRADI3G09520
Brachypodium distachyon
BRADI3G09520
I
0.881
LPERR02G09170
Leersia perrieri
LPERR02G09170
I
0.880
Lus10009939.g
Linum usitatissimum
Lus10009939.g
I
0.880
OB02G19660
Oryza brachyantha
OB02G19660
I
0.880
GSMUA_Achr2G20020_001
Musa acuminata
GSMUA_Achr2G20020_001
I
0.879
evm.TU.supercontig_118.26
Carica papaya
evm.TU.supercontig_118.26
I
0.878
evm.TU.supercontig_37.89
Carica papaya
evm.TU.supercontig_37.89
I
0.877
Ciclev10006623m.g
Citrus clementina
Ciclev10006623m.g
I
0.876
OPUNC02G09610
Oryza punctata
OPUNC02G09610
I
0.876
orange1.1g046523m.g
Citrus sinensis
orange1.1g046523m.g
I
0.876
Aquca_030_00252
Aquilegia coerulea
Aquca_030_00252
I
0.874
GRMZM2G155816
Zea mays
GRMZM2G155816
I
0.874
Pm024260
Prunus mume
Pm024260
I
0.873
PRUPE_ppa006801mg
Prunus persica
PRUPE_ppa006801mg
I
0.873
SapurV1A.2717s0010
Salix purpurea
SapurV1A.2717s0010
I
0.872
SapurV1A.0941s0070
Salix purpurea
SapurV1A.0941s0070
I
0.872
POPTR_0001s45250
Populus trichocarpa
POPTR_0001s45250
I
0.872
mgf025569m
Mimulus guttatus
mgf025569m
I
0.872
Ciclev10021141m.g
Citrus clementina
Ciclev10021141m.g
I
0.871
TCM_015621
Theobroma cacao
TCM_015621
I
0.871
Gorai.004G129200
Gossypium raimondii
Gorai.004G129200
I
0.871
cassava42638.valid.m1
Manihot esculenta
cassava42638.valid.m1
I
0.871
30068.m002591
Ricinus communis
30068.m002591
I
0.871
orange1.1g014260m.g
Citrus sinensis
orange1.1g014260m.g
I
0.871
gene01881-v1.0-hybrid
Fragaria vesca
gene01881-v1.0-hybrid
I
0.871