CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.032500
(
Cucumis sativus
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Cucsa.032500
T296942_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC054
M07205_2.00
Arabidopsis thaliana
CKTVHNNHRCACGYHANCW
WGNTDRCGTGYDNNDBAMG
Dap-seq
OMalley et al.(2016)
CUC1_colamp_a
0.897
0.842
NAC054
M07206_2.00
Arabidopsis thaliana
TWNCKTGHNNNDCAMG
CKTGHNNNDCAMGNWA
Dap-seq
OMalley et al.(2016)
CUC1_col_v31
0.897
0.842
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.032500.1
NAC/NAM
15
141
PPGFRFHPTDEELIGHYLLKKVLNSHFSSPAIAHVDLNKSEPWDLPEKALMGEKEWYFFSVRDRKYPTGLRTNRATEAGYWKATGKDREIMSSKTNSLIGMKKTLVFYRGRAPKGQKSNWVMHEFRL
Links
Other
NAC/NAM
family TFs
Other
Cucumis sativus
TFs
30 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cla004358
Citrullus lanatus
Cla004358
I
0.970
Cucsa.158180
Cucumis sativus
Cucsa.158180
I
0.924
GLYMA13G34950
Glycine max
GLYMA13G34950
I
0.903
GLYMA12G35530
Glycine max
GLYMA12G35530
I
0.903
VIT_19s0014g02200
Vitis vinifera
VIT_19s0014g02200
I
0.898
NAC054
Arabidopsis thaliana
AT3G15170
D
0.897
Carubv10014276m.g
Capsella rubella
Carubv10014276m.g
I
0.897
Bo3g066690
Brassica oleracea
Bo3g066690
I
0.897
CUC1
Arabidopsis lyrata
fgenesh2_kg.3__1650__AT3G15170.1
I
0.897
Cagra.0007s0060
Capsella grandiflora
Cagra.0007s0060
I
0.897
Bostr.28625s0180
Boechera stricta
Bostr.28625s0180
I
0.897
Thhalv10021186m.g
Eutrema salsugineum
Thhalv10021186m.g
I
0.897
Bra001586
Brassica rapa
Bra001586
I
0.897
Bra021592
Brassica rapa
Bra021592
I
0.896
Bo1g129730
Brassica oleracea
Bo1g129730
I
0.896
LjSGA_071377.1
Lotus japonicus
LjSGA_071377.1
I
0.894
GLYMA06G35660
Glycine max
GLYMA06G35660
I
0.893
Ca_22532
Cicer arietinum
Ca_22532
I
0.893
MTR_2g078700
Medicago truncatula
MTR_2g078700
I
0.893
GLYMA12G26190
Glycine max
GLYMA12G26190
I
0.893
Cla023717
Citrullus lanatus
Cla023717
I
0.892
Cucsa.122890
Cucumis sativus
Cucsa.122890
I
0.891
Aquca_033_00035
Aquilegia coerulea
Aquca_033_00035
I
0.886
gene00971-v1.0-hybrid
Fragaria vesca
gene00971-v1.0-hybrid
I
0.885
chr3.CM0282.730.nc
Lotus japonicus
chr3.CM0282.730.nc
I
0.883
TCM_018621
Theobroma cacao
TCM_018621
I
0.882
mgf003818m
Mimulus guttatus
mgf003818m
I
0.881
VIT_14s0108g01070
Vitis vinifera
VIT_14s0108g01070
I
0.877
POPTR_0001s40680
Populus trichocarpa
POPTR_0001s40680
I
0.873
SapurV1A.0207s0120
Salix purpurea
SapurV1A.0207s0120
I
0.873