CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.341800
(
Cucumis sativus
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Cucsa.341800
T297016_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC055
M00976_2.00
Arabidopsis thaliana
RYACGKAAN
NTTMCGTRY
PBM
Lindemose et al.(2014)
ANAC055
0.901
0.877
NAC055
M00885_2.00
Arabidopsis thaliana
TTACGTD
HACGTAA
PBM
Franco-Zorrilla et al.(2014)
ANAC55
0.901
0.877
NAC055
M07207_2.00
Arabidopsis thaliana
DDNYNWNWNNNDYACGKMWYY
RRWKMCGTRHNNNWNWNRNHH
Dap-seq
OMalley et al.(2016)
ANAC055_col
0.901
0.877
NAC019
M00972_2.00
Arabidopsis thaliana
NNYACGBMWN
NWKVCGTRNN
PBM
Lindemose et al.(2014)
ANAC019
0.896
0.886
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.341800.1
NAC/NAM
15
172
PPGFRFYPTDEELLVQYLCRKVAGHNFSLQIIGDIDLYKFDPWVLPSTYSEKYYIIAILFFVNLKFVNYLIFFYLFGFAGKAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTQGKKVGIKKALVFYVGKAPKGTKTNWIMHEYRL
Cucsa.341800.2
NAC/NAM
15
139
PPGFRFYPTDEELLVQYLCRKVAGHNFSLQIIGDIDLYKFDPWVLPSKAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTQGKKVGIKKALVFYVGKAPKGTKTNWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Cucumis sativus
TFs
80 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy