CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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e_gw1.327.11.1
(
Physcomitrella patens
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
e_gw1.327.11.1
T297040_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
e_gw1.327.11.1
M02382_2.00
Physcomitrella patens
NTTDYRTWWN
NWWAYRHAAN
PBM
Weirauch et al.(2014)
pTH8478
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
e_gw1.288.15.1
M02381_2.00
Physcomitrella patens
NNNBAMKNHW
WDNMKTVNNN
PBM
Weirauch et al.(2014)
pTH8467
0.938
0.798
e_gw1.159.34.1
M02379_2.00
Physcomitrella patens
DYACGNHANN
NNTDNCGTRH
PBM
Weirauch et al.(2014)
pTH8477
0.925
0.825
e_gw1.279.28.1
M02380_2.00
Physcomitrella patens
NNNTTGHKTDY
RHAMDCAANNN
PBM
Weirauch et al.(2014)
pTH8466
0.906
0.798
NAC098
M07239_2.00
Arabidopsis thaliana
CKTGTNNNDYAMGYHA
TDRCKTRHNNNACAMG
Dap-seq
OMalley et al.(2016)
CUC2_colamp_a
0.900
0.737
NAC098
M07240_2.00
Arabidopsis thaliana
NNNTWNCKTGHNNHWCAMG
CKTGWDNNDCAMGNWANNN
Dap-seq
OMalley et al.(2016)
CUC2_col
0.900
0.737
NAC079
M02373_2.00
Arabidopsis thaliana
TTGCGTRY
RYACGCAA
PBM
Weirauch et al.(2014)
pTH7399
0.881
0.719
NAC079
M07228_2.00
Arabidopsis thaliana
CBWNHNNHACACGYWA
TWRCGTGTDNNDNWVG
Dap-seq
OMalley et al.(2016)
ANAC079_colamp_a
0.881
0.719
NAC079
M07229_2.00
Arabidopsis thaliana
NTWNCKTVHNNHWCAMGYWAH
DTWRCKTGWDNNDBAMGNWAN
Dap-seq
OMalley et al.(2016)
ANAC079_col
0.881
0.719
ANAC080
M02376_2.00
Arabidopsis lyrata
NBAMKNHWNN
NNWDNMKTVN
PBM
Weirauch et al.(2014)
pTH9230
0.881
0.711
NAC100
M02375_2.00
Arabidopsis thaliana
NBAMKNHWNN
NNWDNMKTVN
PBM
Weirauch et al.(2014)
pTH7239
0.874
0.711
For this family, TFs with SR scores >
0.870
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02382_2.00
NAC/NAM
4
130
PPGFRFHPTDEELVVYYLARKIREPGFEVKTICEVDLNKCEPWDLPEKAKLGEKEWYFFSLRDRKYPTGMRTNRATEKGYWKATGKDRDVMNSGTHALVGMKKTLVFYRGRAPRGVKTHWIMHEYRL
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.327.11.1
NAC/NAM
4
130
PPGFRFHPTDEELVVYYLARKIREPGFEVKTICEVDLNKCEPWDLPEKAKLGEKEWYFFSLRDRKYPTGMRTNRATEKGYWKATGKDRDVMNSGTHALVGMKKTLVFYRGRAPRGVKTHWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Physcomitrella patens
TFs
173 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy