estExt_gwp_gw1.C_460173 (Physcomitrella patens)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 estExt_gwp_gw1.C_460173 T297047_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
e_gw1.288.15.1
M02381_2.00
Physcomitrella patens
NNNBAMKNHW

WDNMKTVNNN
PBM
Weirauch et al.(2014)
pTH8467
0.948 0.895
e_gw1.327.11.1
M02382_2.00
Physcomitrella patens
NTTDYRTWWN

NWWAYRHAAN
PBM
Weirauch et al.(2014)
pTH8478
0.923 0.789
e_gw1.159.34.1
M02379_2.00
Physcomitrella patens
DYACGNHANN

NNTDNCGTRH
PBM
Weirauch et al.(2014)
pTH8477
0.910 0.825
NAC098
M07239_2.00
Arabidopsis thaliana
CKTGTNNNDYAMGYHA

TDRCKTRHNNNACAMG
Dap-seq
OMalley et al.(2016)
CUC2_colamp_a
0.907 0.798
NAC098
M07240_2.00
Arabidopsis thaliana
NNNTWNCKTGHNNHWCAMG

CKTGWDNNDCAMGNWANNN
Dap-seq
OMalley et al.(2016)
CUC2_col
0.907 0.798
ANAC080
M02376_2.00
Arabidopsis lyrata
NBAMKNHWNN

NNWDNMKTVN
PBM
Weirauch et al.(2014)
pTH9230
0.898 0.798
NAC054
M07205_2.00
Arabidopsis thaliana
CKTVHNNHRCACGYHANCW

WGNTDRCGTGYDNNDBAMG
Dap-seq
OMalley et al.(2016)
CUC1_colamp_a
0.898 0.789
NAC054
M07206_2.00
Arabidopsis thaliana
TWNCKTGHNNNDCAMG

CKTGHNNNDCAMGNWA
Dap-seq
OMalley et al.(2016)
CUC1_col_v31
0.898 0.789
NAC079
M02373_2.00
Arabidopsis thaliana
TTGCGTRY

RYACGCAA
PBM
Weirauch et al.(2014)
pTH7399
0.897 0.772
NAC079
M07228_2.00
Arabidopsis thaliana
CBWNHNNHACACGYWA

TWRCGTGTDNNDNWVG
Dap-seq
OMalley et al.(2016)
ANAC079_colamp_a
0.897 0.772
NAC079
M07229_2.00
Arabidopsis thaliana
NTWNCKTVHNNHWCAMGYWAH

DTWRCKTGWDNNDBAMGNWAN
Dap-seq
OMalley et al.(2016)
ANAC079_col
0.897 0.772
NAC59
M11080_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANAC059_01
0.894 0.763
NAC100
M02375_2.00
Arabidopsis thaliana
NBAMKNHWNN

NNWDNMKTVN
PBM
Weirauch et al.(2014)
pTH7239
0.892 0.781
NAC92
M00979_2.00
Arabidopsis thaliana
NNDYACGBHA

TDVCGTRHNN
PBM
Lindemose et al.(2014)
ANAC092
0.891 0.763
NAC92
M00730_2.00
Arabidopsis thaliana
DYACGNHAN

NTDNCGTRH
PBM
Chang et al.(2013)
pTH7335
0.891 0.763
NAC92
M07234_2.00
Arabidopsis thaliana
TWNCKTGHNNHDCAMGYWAY

RTWRCKTGHDNNDCAMGNWA
Dap-seq
OMalley et al.(2016)
ANAC092_colamp_a
0.891 0.763
NAC92
M07235_2.00
Arabidopsis thaliana
WRCKTGTNNNDCAMG

CKTGHNNNACAMGYW
Dap-seq
OMalley et al.(2016)
ANAC092_col_v3a
0.891 0.763
ANAC100
M02377_2.00
Arabidopsis lyrata
DYACGYHANN

NNTDRCGTRH
PBM
Weirauch et al.(2014)
pTH9234
0.886 0.781
NAC031
M07182_2.00
Arabidopsis thaliana
NTWDCKTGTNNHWYACGY

RCGTRWDNNACAMGHWAN
Dap-seq
OMalley et al.(2016)
CUC3_col_a
0.872 0.675
NAC031
M07183_2.00
Arabidopsis thaliana
CKTGTNNHDCACGYHA

TDRCGTGHDNNACAMG
Dap-seq
OMalley et al.(2016)
CUC3_colamp_a
0.872 0.675
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_gwp_gw1.C_460173 NAC/NAM 23 149

Links

Other NAC/NAM family TFs
Other Physcomitrella patens TFs

279 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
23912_Multiple Saccharomyces bayanus 23912_Multiple I 0.000
AACERI_AaceriAFR136C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFR136C I 0.000
AGOS_AFR136C Ashbya gossypii AGOS_AFR136C I 0.000
AWRI1499_0492 Brettanomyces bruxellensis AWRI1499_0492 N 0.000
BN7_3380 Wickerhamomyces ciferrii BN7_3380 I 0.000
BN7_4359 Wickerhamomyces ciferrii BN7_4359 N 0.000
CANTEDRAFT_132848 Candida tenuis CANTEDRAFT_132848 I 0.000
CaO19.11452 Candida albicans CaO19.11452 N 0.000
CaO19.3969 Candida albicans CaO19.3969 N 0.000
CaO19.454 Candida albicans CaO19.454 I 0.000
CaO19.8085 Candida albicans CaO19.8085 I 0.000
CD36_31370 Candida dubliniensis CD36_31370 N 0.000
CD36_54430 Candida dubliniensis CD36_54430 N 0.000
CLUG_01812 Clavispora lusitaniae CLUG_01812 N 0.000
CLUG_01812 Candida lusitaniae CLUG_01812 N 0.000
CORT_0F01150 Candida orthopsilosis CORT_0F01150 N 0.000
CPAG_02000 Candida parapsilosis CPAG_02000 N 0.000
CTRG_00655 Candida tropicalis CTRG_00655 I 0.000
CTRG_06093 Candida tropicalis CTRG_06093 I 0.000
DEHA2G10560g Debaryomyces hansenii DEHA2G10560g I 0.000
DEHA2G20636g Debaryomyces hansenii DEHA2G20636g I 0.000
Ecym_2312 Eremothecium cymbalariae Ecym_2312 I 0.000
estExt_fgenesh1_pg.C_chr_2.10346 Pichia stipitis estExt_fgenesh1_pg.C_chr_2.10346 N 0.000
estExt_fgenesh1_pg.C_chr_6.10474 Pichia stipitis estExt_fgenesh1_pg.C_chr_6.10474 I 0.000
G210_0510 Candida maltosa G210_0510 I 0.000
G210_1597 Candida maltosa G210_1597 N 0.000
GNLVRS01_PISO0A02134g Millerozyma farinosa GNLVRS01_PISO0A02134g N 0.000
GNLVRS01_PISO0B02289g Millerozyma farinosa GNLVRS01_PISO0B02289g N 0.000
GNLVRS01_PISO0E07748g Millerozyma farinosa GNLVRS01_PISO0E07748g I 0.000
GNLVRS01_PISO0F09091g Millerozyma farinosa GNLVRS01_PISO0F09091g I 0.000
HPODL_00777 Ogataea parapolymorpha HPODL_00777 I 0.000
JL09_g3802 Pichia kudriavzevii JL09_g3802 N 0.000
KUCA_T00005514001 Kuraishia capsulata KUCA_T00005514001 N 0.000
LELG_04038 Lodderomyces elongisporus LELG_04038 N 0.000
PAS_chr2-1_0404 Komagataella pastoris PAS_chr2-1_0404 N 0.000
PGUG_03027 Meyerozyma guilliermondii PGUG_03027 N 0.000
PGUG_03027 Candida guilliermondii PGUG_03027 N 0.000
PGUG_04779 Candida guilliermondii PGUG_04779 I 0.000
PGUG_04779 Meyerozyma guilliermondii PGUG_04779 I 0.000
PICST_66881 Scheffersomyces stipitis PICST_66881 N 0.000
PICST_68146 Scheffersomyces stipitis PICST_68146 I 0.000