CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0334s0001
(
Capsella grandiflora
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Cagra.0334s0001
T297352_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.918
0.889
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0334s0001.1.p
NAC/NAM
1
106
NWLVDEAIGEINICNYEPFYLPSLSKIQSDDLVWYFFSPKEYTSVKKKVIKRTTSSGYWKATGVDRKIKDKRGNRGEIGIKKTLVYYEGRVPNGVWTPWVMHEYHI
Links
Other
NAC/NAM
family TFs
Other
Capsella grandiflora
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10003260m.g
Capsella rubella
Carubv10003260m.g
I
0.942
NAC69
Arabidopsis thaliana
AT4G01550
D
0.918
Bostr.4825s0023
Boechera stricta
Bostr.4825s0023
I
0.918
anac069
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002854
I
0.918
Bra008553
Brassica rapa
Bra008553
I
0.899
Bra036328
Brassica rapa
Bra036328
I
0.896
Thhalv10028684m.g
Eutrema salsugineum
Thhalv10028684m.g
I
0.882
Bo00853s060
Brassica oleracea
Bo00853s060
I
0.878
Bo9g004070
Brassica oleracea
Bo9g004070
I
0.875