CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.12529s0001
(
Capsella grandiflora
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Cagra.12529s0001
T297383_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.938
0.704
NAC68
M07214_2.00
Arabidopsis thaliana
RCTTVYNBNNYAAGY
RCTTRNNVNRBAAGY
Dap-seq
OMalley et al.(2016)
NTM1_col_a
0.883
0.704
NAC68
M07215_2.00
Arabidopsis thaliana
HDYYRCTTTTTNNHYHYHNNN
NNNDRDRDNNAAAAAGYRRHD
Dap-seq
OMalley et al.(2016)
NTM1_colamp_a
0.883
0.704
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.12529s0001.1.p
NAC/NAM
5
133
LIGSRFSPTGEELINDYLKNKNLGKTWLVHEAIGEINILSYIPKLLPDLAVIRSKDPEWYFFSPIVYTNSKKKEMKRITGSGYWKTTGKNRIIRDKSCVEIGLKKTLMYYTGKVPNGVWTPWVMHEYHI
Cagra.12529s0001.2.p
NAC/NAM
5
133
LIGSRFSPTGEELINDYLKNKNLGKTWLVHEAIGEINILSYIPKLLPDLAVIRSKDPEWYFFSPIVYTNSKKKEMKRITGSGYWKTTGKNRIIRDKSCVEIGLKKTLMYYTGKVPNGVWTPWVMHEYHI
Links
Other
NAC/NAM
family TFs
Other
Capsella grandiflora
TFs
27 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy