Cagra.12686s0005 (Capsella grandiflora)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Cagra.12686s0005 T297384_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BRN2
M07217_2.00
Arabidopsis thaliana
CKTVHDNNNYAMGYWA

TWRCKTRNNNHDBAMG
Dap-seq
OMalley et al.(2016)
ANAC070_colamp_a
0.974 0.991
BRN2
M07218_2.00
Arabidopsis thaliana
TWDCKTVHDNHDYAMGYWAHH

DDTWRCKTRHDNHDBAMGHWA
Dap-seq
OMalley et al.(2016)
ANAC070_col
0.974 0.991
SMB
M07184_2.00
Arabidopsis thaliana
TWNCKTVHDNHNYAMGYWAYH

DRTWRCKTRNDNHDBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_col_a
0.919 0.825
SMB
M07185_2.00
Arabidopsis thaliana
TWNCKTVNNNNNYAMG

CKTRNNNNNBAMGNWA
Dap-seq
OMalley et al.(2016)
SMB_colamp_a
0.919 0.825
MDP0000762302
M02383_2.00
Malus domestica
NNNAMKHNWN

NWNDMKTNNN
PBM
Weirauch et al.(2014)
pTH9205
0.909 0.798
NAC012
M00971_2.00
Arabidopsis thaliana
NYAMGYHANN

NNTDRCKTRN
PBM
Lindemose et al.(2014)
SND1
0.892 0.798
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.12686s0005.1.p NAC/NAM 10 137

Links

Other NAC/NAM family TFs
Other Capsella grandiflora TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.25463s0283 Boechera stricta Bostr.25463s0283 I 0.978
Carubv10003879m.g Capsella rubella Carubv10003879m.g I 0.978
Bra000709 Brassica rapa Bra000709 I 0.978
Bo9g088300 Brassica oleracea Bo9g088300 I 0.974
Bra037914 Brassica rapa Bra037914 I 0.974
BRN2 Arabidopsis thaliana AT4G10350 D 0.974
ANAC070 Arabidopsis lyrata Al_scaffold_0006_3164 I 0.974
Thhalv10029403m.g Eutrema salsugineum Thhalv10029403m.g I 0.974
Thhalv10008226m.g Eutrema salsugineum Thhalv10008226m.g I 0.972
BRN1 Arabidopsis thaliana AT1G33280 I 0.971
Cagra.6133s0030 Capsella grandiflora Cagra.6133s0030 I 0.970
ANAC015 Arabidopsis lyrata fgenesh2_kg.1__3458__AT1G33280.1 I 0.970
Carubv10010920m.g Capsella rubella Carubv10010920m.g I 0.970
Bostr.3359s0042 Boechera stricta Bostr.3359s0042 I 0.970
GLYMA09G36820 Glycine max GLYMA09G36820 I 0.969
VIT_18s0089g01120 Vitis vinifera VIT_18s0089g01120 I 0.969
Eucgr.F04097 Eucalyptus grandis Eucgr.F04097 I 0.969
29382.m000084 Ricinus communis 29382.m000084 I 0.968
Pm022820 Prunus mume Pm022820 I 0.968
Ciclev10024588m.g Citrus clementina Ciclev10024588m.g I 0.968
orange1.1g042376m.g Citrus sinensis orange1.1g042376m.g I 0.968
MDP0000558493 Malus domestica MDP0000558493 I 0.968
PRUPE_ppa026376mg Prunus persica PRUPE_ppa026376mg I 0.968
Gorai.004G267300 Gossypium raimondii Gorai.004G267300 I 0.968
gene31175-v1.0-hybrid Fragaria vesca gene31175-v1.0-hybrid I 0.968
Aquca_014_00032 Aquilegia coerulea Aquca_014_00032 I 0.968
Lus10013782.g Linum usitatissimum Lus10013782.g I 0.968
Lus10039153.g Linum usitatissimum Lus10039153.g I 0.968
MTR_4g035590 Medicago truncatula MTR_4g035590 I 0.967
GLYMA12G00540 Glycine max GLYMA12G00540 I 0.967
Cla012576 Citrullus lanatus Cla012576 I 0.967
MDP0000257674 Malus domestica MDP0000257674 I 0.967
Ca_15792 Cicer arietinum Ca_15792 I 0.967
Cucsa.237820 Cucumis sativus Cucsa.237820 I 0.967
Solyc06g063430.1 Solanum lycopersicum Solyc06g063430.1 I 0.966
MLOC_19175 Hordeum vulgare MLOC_19175 I 0.965
Traes_2AL_F0B17F0EA Triticum aestivum Traes_2AL_F0B17F0EA I 0.965
Traes_2BL_209C14A8F Triticum aestivum Traes_2BL_209C14A8F I 0.965
Traes_2DL_70F83D4B9 Triticum aestivum Traes_2DL_70F83D4B9 I 0.965
TCM_036034 Theobroma cacao TCM_036034 I 0.965
BRADI5G11247 Brachypodium distachyon BRADI5G11247 I 0.965
F775_23174 Aegilops tauschii F775_23174 I 0.965
AMTR_s00099p00131560 Amborella trichopoda AMTR_s00099p00131560 I 0.964
OBART04G13830 Oryza barthii OBART04G13830 I 0.963
BGIOSGA034998 Oryza indica BGIOSGA034998 I 0.963
BGIOSGA015018 Oryza indica BGIOSGA015018 I 0.963
ONIVA04G12040 Oryza nivara ONIVA04G12040 I 0.963
OLONG_020428 Oryza longistaminata OLONG_020428 I 0.963
GRMZM2G099144 Zea mays GRMZM2G099144 I 0.963
ORUFI04G15090 Oryza rufipogon ORUFI04G15090 I 0.962
OB04G21050 Oryza brachyantha OB04G21050 I 0.962
TRIUR3_28259 Triticum urartu TRIUR3_28259 I 0.962
Sb06g017720 Sorghum bicolor Sb06g017720 I 0.962
Pavir.J07268 Panicum virgatum Pavir.J07268 I 0.962
Pavir.Gb01599 Panicum virgatum Pavir.Gb01599 I 0.962
Si012319m.g Setaria italica Si012319m.g I 0.962
mgf017656m Mimulus guttatus mgf017656m I 0.962
OGLUM04G13590 Oryza glumaepatula OGLUM04G13590 I 0.962
GRMZM2G435824 Zea mays GRMZM2G435824 I 0.959
GSMUA_Achr6G28890_001 Musa acuminata GSMUA_Achr6G28890_001 I 0.959
cassava4621.m1 Manihot esculenta cassava4621.m1 I 0.957
POPTR_0013s09280 Populus trichocarpa POPTR_0013s09280 I 0.951
SapurV1A.1219s0030 Salix purpurea SapurV1A.1219s0030 I 0.950
POPTR_0019s09400 Populus trichocarpa POPTR_0019s09400 I 0.933
gene19898-v1.0-hybrid Fragaria vesca gene19898-v1.0-hybrid I 0.932
PRUPE_ppa025341mg Prunus persica PRUPE_ppa025341mg I 0.931
PK10271.1 Cannabis sativa PK10271.1 I 0.931
Gorai.004G268500 Gossypium raimondii Gorai.004G268500 I 0.931
29725.m000235 Ricinus communis 29725.m000235 I 0.931
TCM_033728 Theobroma cacao TCM_033728 I 0.931
Ca_13929 Cicer arietinum Ca_13929 I 0.931
Pm010886 Prunus mume Pm010886 I 0.931
GSMUA_Achr2G05640_001 Musa acuminata GSMUA_Achr2G05640_001 I 0.931
SapurV1A.0907s0070 Salix purpurea SapurV1A.0907s0070 I 0.930
SMB Vitis vinifera VIT_19s0085g01210 I 0.928
MTR_2g062730 Medicago truncatula MTR_2g062730 I 0.928
LjSGA_059487.1 Lotus japonicus LjSGA_059487.1 I 0.928
cassava32687.m1 Manihot esculenta cassava32687.m1 I 0.928
GLYMA08G17140 Glycine max GLYMA08G17140 I 0.928
Cla005561 Citrullus lanatus Cla005561 I 0.926
Solyc12g017400.1 Solanum lycopersicum Solyc12g017400.1 I 0.926
PGSC0003DMG400009665 Solanum tuberosum PGSC0003DMG400009665 I 0.926
MDP0000501518 Malus domestica MDP0000501518 I 0.925
MDP0000652584 Malus domestica MDP0000652584 I 0.925
Bra003602 Brassica rapa Bra003602 I 0.925
GLYMA15G42050 Glycine max GLYMA15G42050 I 0.924
Bo6g123980 Brassica oleracea Bo6g123980 I 0.920
Bra035127 Brassica rapa Bra035127 I 0.920
mg017416m Mimulus guttatus mg017416m I 0.920
SMB Arabidopsis thaliana AT1G79580 D 0.919
Carubv10020504m.g Capsella rubella Carubv10020504m.g I 0.919
Bo6g080930 Brassica oleracea Bo6g080930 I 0.919
Thhalv10019534m.g Eutrema salsugineum Thhalv10019534m.g I 0.919
Bostr.20129s0396 Boechera stricta Bostr.20129s0396 I 0.919
SMB Arabidopsis lyrata scaffold_202942.1 I 0.919
Cagra.1725s0032 Capsella grandiflora Cagra.1725s0032 I 0.919
SapurV1A.0093s0460 Salix purpurea SapurV1A.0093s0460 I 0.918
POPTR_0008s07950 Populus trichocarpa POPTR_0008s07950 I 0.918
POPTR_0010s18420 Populus trichocarpa POPTR_0010s18420 I 0.918
cassava39971.m1 Manihot esculenta cassava39971.m1 I 0.918
SapurV1A.0164s0070 Salix purpurea SapurV1A.0164s0070 I 0.918
GRMZM2G104074 Zea mays GRMZM2G104074 I 0.915
Bo2g095440 Brassica oleracea Bo2g095440 I 0.915
GRMZM2G041746 Zea mays GRMZM2G041746 I 0.915
Sb10g020860 Sorghum bicolor Sb10g020860 I 0.915
Cucsa.240210 Cucumis sativus Cucsa.240210 I 0.914
Pavir.Aa02770 Panicum virgatum Pavir.Aa02770 I 0.914
Pavir.Ab01037 Panicum virgatum Pavir.Ab01037 I 0.914
Si017641m.g Setaria italica Si017641m.g I 0.913
Eucgr.E01053 Eucalyptus grandis Eucgr.E01053 I 0.912
Traes_7DL_AD6EAD1A6 Triticum aestivum Traes_7DL_AD6EAD1A6 I 0.912
Bra008423 Brassica rapa Bra008423 I 0.912
Traes_7DL_AD6EAD1A61 Triticum aestivum Traes_7DL_AD6EAD1A61 I 0.912
F775_42361 Aegilops tauschii F775_42361 I 0.912
TRIUR3_14210 Triticum urartu TRIUR3_14210 I 0.912
MLOC_17128 Hordeum vulgare MLOC_17128 I 0.912
POPTR_0011s15640 Populus trichocarpa POPTR_0011s15640 I 0.912
BRADI1G38730 Brachypodium distachyon BRADI1G38730 I 0.912
SapurV1A.0131s0060 Salix purpurea SapurV1A.0131s0060 I 0.912
Traes_7AL_46F73E667 Triticum aestivum Traes_7AL_46F73E667 I 0.912
Si007822m.g Setaria italica Si007822m.g I 0.911
Sb04g009180 Sorghum bicolor Sb04g009180 I 0.911
OB02G19660 Oryza brachyantha OB02G19660 I 0.911
Pavir.J05053 Panicum virgatum Pavir.J05053 I 0.911
BRADI3G09520 Brachypodium distachyon BRADI3G09520 I 0.911
Pavir.Da01009 Panicum virgatum Pavir.Da01009 I 0.911
Lus10009939.g Linum usitatissimum Lus10009939.g I 0.910
Lus10030143.g Linum usitatissimum Lus10030143.g I 0.910
LPERR02G09170 Leersia perrieri LPERR02G09170 I 0.910
GSMUA_Achr2G20020_001 Musa acuminata GSMUA_Achr2G20020_001 I 0.909
PK22182.1 Cannabis sativa PK22182.1 I 0.909
MDP0000140229 Malus domestica MDP0000140229 I 0.909
MDP0000762302 Malus domestica MDP0000762302 D 0.909
evm.TU.supercontig_37.89 Carica papaya evm.TU.supercontig_37.89 I 0.908
Gorai.008G259700 Gossypium raimondii Gorai.008G259700 I 0.907
evm.TU.supercontig_118.26 Carica papaya evm.TU.supercontig_118.26 I 0.907
OPUNC02G09610 Oryza punctata OPUNC02G09610 I 0.907
Gorai.004G129200 Gossypium raimondii Gorai.004G129200 I 0.904
Aquca_030_00252 Aquilegia coerulea Aquca_030_00252 I 0.904
GRMZM2G155816 Zea mays GRMZM2G155816 I 0.904
TCM_015621 Theobroma cacao TCM_015621 I 0.903
gene01881-v1.0-hybrid Fragaria vesca gene01881-v1.0-hybrid I 0.903
orange1.1g014260m.g Citrus sinensis orange1.1g014260m.g I 0.903
30068.m002591 Ricinus communis 30068.m002591 I 0.903
Ciclev10021141m.g Citrus clementina Ciclev10021141m.g I 0.903
cassava42638.valid.m1 Manihot esculenta cassava42638.valid.m1 I 0.903
POPTR_0001s45250 Populus trichocarpa POPTR_0001s45250 I 0.902
SapurV1A.2717s0010 Salix purpurea SapurV1A.2717s0010 I 0.902
SapurV1A.0941s0070 Salix purpurea SapurV1A.0941s0070 I 0.902
OLONG_007664 Oryza longistaminata OLONG_007664 I 0.901
OBART02G10820 Oryza barthii OBART02G10820 I 0.901
ORUFI02G10740 Oryza rufipogon ORUFI02G10740 I 0.901
BGIOSGA007898 Oryza indica BGIOSGA007898 I 0.901
Ciclev10006623m.g Citrus clementina Ciclev10006623m.g I 0.901
OGLUM02G10770 Oryza glumaepatula OGLUM02G10770 I 0.901
OS02G0252200 Oryza sativa OS02G0252200 I 0.901
ORGLA02G0097800 Oryza glaberrima ORGLA02G0097800 I 0.901
ONIVA02G12010 Oryza nivara ONIVA02G12010 I 0.901
orange1.1g046523m.g Citrus sinensis orange1.1g046523m.g I 0.901
PRUPE_ppa006801mg Prunus persica PRUPE_ppa006801mg I 0.900
GSMUA_Achr10G14400_001 Musa acuminata GSMUA_Achr10G14400_001 I 0.900
Pm024260 Prunus mume Pm024260 I 0.900
Lus10017340.g Linum usitatissimum Lus10017340.g I 0.899
Lus10001664.g Linum usitatissimum Lus10001664.g I 0.899
mgf025569m Mimulus guttatus mgf025569m I 0.898
Gorai.003G077700 Gossypium raimondii Gorai.003G077700 I 0.898
cassava45846.m1 Manihot esculenta cassava45846.m1 I 0.898
ONIVA06G20460 Oryza nivara ONIVA06G20460 I 0.897
OMERI06G17980 Oryza meridionalis OMERI06G17980 I 0.897
OB06G24850 Oryza brachyantha OB06G24850 I 0.897
BGIOSGA021116 Oryza indica BGIOSGA021116 I 0.897
ORUFI06G18140 Oryza rufipogon ORUFI06G18140 I 0.897
OS06G0530400 Oryza sativa OS06G0530400 I 0.897
OGLUM06G18230 Oryza glumaepatula OGLUM06G18230 I 0.897
OPUNC06G15490 Oryza punctata OPUNC06G15490 I 0.897
LPERR06G14120 Leersia perrieri LPERR06G14120 I 0.897
OBART06G17120 Oryza barthii OBART06G17120 I 0.897
Gorai.008G130300 Gossypium raimondii Gorai.008G130300 I 0.894
Lus10033239.g Linum usitatissimum Lus10033239.g I 0.893
Lus10008271.g Linum usitatissimum Lus10008271.g I 0.893
Cagra.14513s0001 Capsella grandiflora Cagra.14513s0001 I 0.892
Thhalv10009336m.g Eutrema salsugineum Thhalv10009336m.g I 0.892
NAC012 Arabidopsis thaliana AT1G32770 D 0.892
ANAC012 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002619 I 0.892
Carubv10011900m.g Capsella rubella Carubv10011900m.g I 0.892
Bostr.3359s0081 Boechera stricta Bostr.3359s0081 I 0.891
Bo5g049360 Brassica oleracea Bo5g049360 I 0.891
AMTR_s00068p00207380 Amborella trichopoda AMTR_s00068p00207380 I 0.890
Bra023288 Brassica rapa Bra023288 I 0.888
VIT_15s0048g02660 Vitis vinifera VIT_15s0048g02660 I 0.884
cassava32649.m1 Manihot esculenta cassava32649.m1 I 0.884
Solyc10g005010.2 Solanum lycopersicum Solyc10g005010.2 I 0.883
PGSC0003DMG400011268 Solanum tuberosum PGSC0003DMG400011268 I 0.883
Aquca_037_00272 Aquilegia coerulea Aquca_037_00272 I 0.883
Pavir.J21162 Panicum virgatum Pavir.J21162 I 0.881
MLOC_66924 Hordeum vulgare MLOC_66924 I 0.881
Pavir.J20698 Panicum virgatum Pavir.J20698 I 0.881
F775_11081 Aegilops tauschii F775_11081 I 0.881
Sb07g001550 Sorghum bicolor Sb07g001550 I 0.881
Traes_7AL_B000BC0DD Triticum aestivum Traes_7AL_B000BC0DD I 0.881
Traes_7DL_1AD9A3E8D Triticum aestivum Traes_7DL_1AD9A3E8D I 0.881
GRMZM2G092465 Zea mays GRMZM2G092465 I 0.881
Gorai.006G205300 Gossypium raimondii Gorai.006G205300 I 0.880
Cucsa.193460 Cucumis sativus Cucsa.193460 I 0.879
Cla011508 Citrullus lanatus Cla011508 I 0.879
POPTR_0002s17950 Populus trichocarpa POPTR_0002s17950 I 0.876
GSMUA_Achr3G12230_001 Musa acuminata GSMUA_Achr3G12230_001 I 0.875
GSMUA_Achr9G24450_001 Musa acuminata GSMUA_Achr9G24450_001 I 0.874
SELMODRAFT_57388 Selaginella moellendorffii SELMODRAFT_57388 I 0.873
SELMODRAFT_451784 Selaginella moellendorffii SELMODRAFT_451784 I 0.873
POPTR_0014s10060 Populus trichocarpa POPTR_0014s10060 I 0.872
ANAC012 Vitis vinifera VIT_02s0025g02710 I 0.872
SELMODRAFT_408624 Selaginella moellendorffii SELMODRAFT_408624 I 0.872
PDK_20s1408241g001 Phoenix dactylifera PDK_20s1408241g001 I 0.872
SELMODRAFT_402243 Selaginella moellendorffii SELMODRAFT_402243 I 0.872
GSMUA_Achr10G21750_001 Musa acuminata GSMUA_Achr10G21750_001 I 0.871
Gorai.007G048000 Gossypium raimondii Gorai.007G048000 I 0.871
GRMZM2G069047 Zea mays GRMZM2G069047 I 0.871