Cagra.1968s0040 (Capsella grandiflora)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Cagra.1968s0040 T297405_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC005
M07163_2.00
Arabidopsis thaliana
WWNCTTVYNHHNYAAGTWW

WWACTTRNDDNRBAAGNWW
Dap-seq
OMalley et al.(2016)
ANAC005_col_a
0.885 0.667
NAC004
M07161_2.00
Arabidopsis thaliana
CTTVYNYNRYAAGY

RCTTRYNRNRBAAG
Dap-seq
OMalley et al.(2016)
ANAC004_col_a
0.882 0.586
NAC004
M07162_2.00
Arabidopsis thaliana
WVCTTVYNBNRYAAGYWWBNN

NNVWWRCTTRYNVNRBAAGBW
Dap-seq
OMalley et al.(2016)
ANAC004_colamp_a
0.882 0.586
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1968s0040.1.p NAC/NAM 9 138

Links

Other NAC/NAM family TFs
Other Capsella grandiflora TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10009727m.g Capsella rubella Carubv10009727m.g I 0.995
Bostr.5325s0017 Boechera stricta Bostr.5325s0017 I 0.980
Bo5g002960 Brassica oleracea Bo5g002960 I 0.924
Bo5g002950 Brassica oleracea Bo5g002950 I 0.920
Bra033306 Brassica rapa Bra033306 I 0.919
Bostr.5325s0006 Boechera stricta Bostr.5325s0006 I 0.916
Bra033303 Brassica rapa Bra033303 I 0.906
Bostr.5325s0016 Boechera stricta Bostr.5325s0016 I 0.904
Bra033308 Brassica rapa Bra033308 I 0.894
ANAC004 Arabidopsis lyrata Al_scaffold_0001_137 I 0.893
NAC005 Arabidopsis thaliana AT1G02250 D 0.885
NAC004 Arabidopsis thaliana AT1G02230 D 0.882