Cagra.27691s0001 (Capsella grandiflora)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Cagra.27691s0001 T297420_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC002
M00970_2.00 		Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN		 PBM
Lindemose et al.(2014)
ATAF1 		0.907 0.623
NAC002
M07159_2.00 		Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM		 Dap-seq
OMalley et al.(2016)
ATAF1_col_a 		0.907 0.623
NAC002
M07160_2.00 		Arabidopsis thaliana
YACGY
RCGTR		 Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a 		0.907 0.623
NAC69
M07216_2.00 		Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW		 Dap-seq
OMalley et al.(2016)
NTM2_col_b 		0.899 0.509
NAC101
M07241_2.00 		Arabidopsis thaliana
TGCKTVNDNHNYAMG
CKTRNDNHNBAMGCA		 Dap-seq
OMalley et al.(2016)
VND6_colamp_a 		0.898 0.614
NAC101
M07242_2.00 		Arabidopsis thaliana
TTGCKTVHDNNNYAMGYHWHN
NDWDRCKTRNNNHDBAMGCAA		 Dap-seq
OMalley et al.(2016)
VND6_col_v31 		0.898 0.614
NAC48
M11084_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$NAC6_01 		0.896 0.623
NAC59
M11080_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANAC059_01 		0.894 0.851
NAC92
M00979_2.00 		Arabidopsis thaliana
NNDYACGBHA
TDVCGTRHNN		 PBM
Lindemose et al.(2014)
ANAC092 		0.892 0.825
NAC92
M00730_2.00 		Arabidopsis thaliana
DYACGNHAN
NTDNCGTRH		 PBM
Chang et al.(2013)
pTH7335 		0.892 0.825
NAC92
M07234_2.00 		Arabidopsis thaliana
TWNCKTGHNNHDCAMGYWAY
RTWRCKTGHDNNDCAMGNWA		 Dap-seq
OMalley et al.(2016)
ANAC092_colamp_a 		0.892 0.825
NAC92
M07235_2.00 		Arabidopsis thaliana
WRCKTGTNNNDCAMG
CKTGHNNNACAMGYW		 Dap-seq
OMalley et al.(2016)
ANAC092_col_v3a 		0.892 0.825
NAC100
M02375_2.00 		Arabidopsis thaliana
NBAMKNHWNN
NNWDNMKTVN		 PBM
Weirauch et al.(2014)
pTH7239 		0.876 0.798
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.27691s0001.1.p NAC/NAM 22 146

Links

Other NAC/NAM family TFs
Other Capsella grandiflora TFs

Invalid Input OrderBy

322 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action