CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.3375s0006
(
Capsella grandiflora
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Cagra.3375s0006
T297428_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac016
M07172_2.00
Arabidopsis thaliana
DVCKTGNBNNNCAMG
CKTGNNNVNCAMGBH
Dap-seq
OMalley et al.(2016)
ANAC016_col_a
0.950
0.939
anac016
M07173_2.00
Arabidopsis thaliana
TVCKTGNBNNNCAMG
CKTGNNNVNCAMGBA
Dap-seq
OMalley et al.(2016)
ANAC016_colamp_a
0.950
0.939
NAC017
M07174_2.00
Arabidopsis thaliana
NCKTGNBNNNCAMGNWA
TWNCKTGNNNVNCAMGN
Dap-seq
OMalley et al.(2016)
ANAC017_colamp_v31
0.908
0.860
NAC017
M07175_2.00
Arabidopsis thaliana
NDNTTNCTTGBNNNNCAMG
CKTGNNNNVCAAGNAANHN
Dap-seq
OMalley et al.(2016)
ANAC017_col
0.908
0.860
NAC017
M11078_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT1G34190_Q2
0.908
0.860
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.3375s0006.1.p
NAC/NAM
13
139
APGFRFHPTDEELVVYYLKRKICGRKLRINAIGVVDVYKVDPSELPGLSMLKTGDRQWFFFTPRNRKYPNAARSSRGTVTGYWKATGKDRVIEYNSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM
Links
Other
NAC/NAM
family TFs
Other
Capsella grandiflora
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy