Cagra.4849s0008 (Capsella grandiflora)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Cagra.4849s0008 T297437_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC045
M07194_2.00
Arabidopsis thaliana
TTNCTTSHNNNDCAMG

CKTGHNNNDSAAGNAA
Dap-seq
OMalley et al.(2016)
ANAC045_col_a
0.966 0.973
NAC045
M07195_2.00
Arabidopsis thaliana
TTNCTTSHNNNDCAMG

CKTGHNNNDSAAGNAA
Dap-seq
OMalley et al.(2016)
ANAC045_colamp_a
0.966 0.973
PK19314.1
M01291_2.00
Cannabis sativa
NNNNAMDNHW

WDNHKTNNNN
PBM
Lambert et al.(2019)
pTH11252
0.950 0.829
anac057
M07208_2.00
Arabidopsis thaliana
TNCKTGHNNNDCAMGYH

DRCKTGHNNNDCAMGNA
Dap-seq
OMalley et al.(2016)
ANAC057_col_a
0.945 0.820
anac057
M07209_2.00
Arabidopsis thaliana
WNCKTGHNNHDCAMGYHAYCD

HGRTDRCKTGHDNNDCAMGNW
Dap-seq
OMalley et al.(2016)
ANAC057_colamp_a
0.945 0.820
anac028
M01289_2.00
Arabidopsis thaliana
NTTGCGTRH

DYACGCAAN
PBM
Lambert et al.(2019)
pTH9962
0.936 0.820
anac028
M07179_2.00
Arabidopsis thaliana
CTTSHNNHDCAMGYWA

TWRCKTGHDNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC028_col_a
0.936 0.820
PK26618.1
M01292_2.00
Cannabis sativa
NNYAMGHHA

TDDCKTRNN
PBM
Lambert et al.(2019)
pTH11328
0.928 0.829
ANAC020
M07178_2.00
Arabidopsis thaliana
TTNCKTGHNNNDCAMGYHAHY

RDTDRCKTGHNNNDCAMGNAA
Dap-seq
OMalley et al.(2016)
ANAC020_col_v31
0.916 0.739
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4849s0008.1.p NAC/NAM 7 133

Links

Other NAC/NAM family TFs
Other Capsella grandiflora TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BGIOSGA020460 Oryza indica BGIOSGA020460 N 0.000
Bo9g013770 Brassica oleracea Bo9g013770 N 0.000
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.000
Bra026466 Brassica rapa Bra026466 N 0.000
BRADI2G14790 Brachypodium distachyon BRADI2G14790 N 0.000
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.000
Carubv10000608m.g Capsella rubella Carubv10000608m.g N 0.000
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.000
Ca_03953 Cicer arietinum Ca_03953 N 0.000
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 0.000
Cla004302 Citrullus lanatus Cla004302 N 0.000
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.000
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.000
F775_08366 Aegilops tauschii F775_08366 N 0.000
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.000
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.000
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.000
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.000
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.000
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.000
GRMZM2G077436 Zea mays GRMZM2G077436 N 0.000
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.000
LPERR05G23180 Leersia perrieri LPERR05G23180 N 0.000
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.000
MDP0000831937 Malus domestica MDP0000831937 N 0.000
mgf001401m Mimulus guttatus mgf001401m N 0.000
mgf006107m Mimulus guttatus mgf006107m N 0.000
MLOC_61094 Hordeum vulgare MLOC_61094 N 0.000
OB05G35020 Oryza brachyantha OB05G35020 N 0.000
OGLUM05G29030 Oryza glumaepatula OGLUM05G29030 N 0.000
OLONG_028119 Oryza longistaminata OLONG_028119 N 0.000
OMERI05G23510 Oryza meridionalis OMERI05G23510 N 0.000
ONIVA05G29570 Oryza nivara ONIVA05G29570 N 0.000
OPUNC05G25110 Oryza punctata OPUNC05G25110 N 0.000
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N 0.000
ORGLA05G0239100 Oryza glaberrima ORGLA05G0239100 N 0.000
ORUFI05G29480 Oryza rufipogon ORUFI05G29480 N 0.000
Pavir.J13718 Panicum virgatum Pavir.J13718 N 0.000
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.000
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.000
Sb09g030110 Sorghum bicolor Sb09g030110 N 0.000
Si021904m.g Setaria italica Si021904m.g N 0.000
SIGE Arabidopsis thaliana AT5G24120 N 0.000
SIGE Vitis vinifera VIT_16s0050g02520 N 0.000
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.000
TCM_015349 Theobroma cacao TCM_015349 N 0.000
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.000
Traes_1AL_0C41C44B1 Triticum aestivum Traes_1AL_0C41C44B1 N 0.000
TRIUR3_33378 Triticum urartu TRIUR3_33378 N 0.000