CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.6372s0006
(
Capsella grandiflora
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Cagra.6372s0006
T297442_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.6372s0006.1.p
NAC/NAM
20
146
PPGFRFHPKDDELVCDYLMRRASSSLHHKPPLVLIQVDLNKCEPWDIPKMACVGGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRAILRKGKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRL
Links
Other
NAC/NAM
family TFs
Other
Capsella grandiflora
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10011081m.g
Capsella rubella
Carubv10011081m.g
N
0.996
Bra030820
Brassica rapa
Bra030820
N
0.976
Bo3g185760
Brassica oleracea
Bo3g185760
N
0.976
NAC1
Arabidopsis lyrata
Al_scaffold_0001_4992
N
0.970
NAC021
Arabidopsis thaliana
AT1G56010
N
0.965
cassava27052.m1
Manihot esculenta
cassava27052.m1
I
0.953
F775_26920
Aegilops tauschii
F775_26920
N
0.953
Thhalv10011659m.g
Eutrema salsugineum
Thhalv10011659m.g
N
0.949
LPERR06G20430
Leersia perrieri
LPERR06G20430
N
0.948
MLOC_53744
Hordeum vulgare
MLOC_53744
N
0.946
TRIUR3_03895
Triticum urartu
TRIUR3_03895
N
0.944
Traes_7AL_BE3253C8F
Triticum aestivum
Traes_7AL_BE3253C8F
N
0.944
Si006975m.g
Setaria italica
Si006975m.g
N
0.944
OLONG_010248
Oryza longistaminata
OLONG_010248
N
0.943
Pavir.Db00380
Panicum virgatum
Pavir.Db00380
N
0.941
BRADI1G32660
Brachypodium distachyon
BRADI1G32660
I
0.932
GRMZM2G167018
Zea mays
GRMZM2G167018
I
0.931
Sb07g005610
Sorghum bicolor
Sb07g005610
I
0.929
F775_30297
Aegilops tauschii
F775_30297
I
0.914
TRIUR3_29250
Triticum urartu
TRIUR3_29250
I
0.914
Traes_7DL_BDD45DB24
Triticum aestivum
Traes_7DL_BDD45DB24
I
0.914
Eucgr.F01449
Eucalyptus grandis
Eucgr.F01449
N
0.913
GRMZM2G063522
Zea mays
GRMZM2G063522
I
0.912
MLOC_25708
Hordeum vulgare
MLOC_25708
N
0.906
Pavir.J04049
Panicum virgatum
Pavir.J04049
I
0.902
Pavir.J36955
Panicum virgatum
Pavir.J36955
I
0.900
PGSC0003DMG400022134
Solanum tuberosum
PGSC0003DMG400022134
N
0.894
Ciclev10021117m.g
Citrus clementina
Ciclev10021117m.g
N
0.889
mgf002183m
Mimulus guttatus
mgf002183m
I
0.889
GSMUA_Achr7G23250_001
Musa acuminata
GSMUA_Achr7G23250_001
I
0.887
Si010680m.g
Setaria italica
Si010680m.g
I
0.884
Ca_13537
Cicer arietinum
Ca_13537
N
0.883
PRUPE_ppa008801mg
Prunus persica
PRUPE_ppa008801mg
N
0.882
MTR_8g094580
Medicago truncatula
MTR_8g094580
I
0.881
Pavir.Gb00488
Panicum virgatum
Pavir.Gb00488
N
0.878
MTR_2g064470
Medicago truncatula
MTR_2g064470
N
0.875
chr3.CM0279.430.nd
Lotus japonicus
chr3.CM0279.430.nd
N
0.875
MDP0000298182
Malus domestica
MDP0000298182
N
0.874
GLYMA05G32850
Glycine max
GLYMA05G32850
I
0.874
gene10469-v1.0-hybrid
Fragaria vesca
gene10469-v1.0-hybrid
N
0.874
Thhalv10021297m.g
Eutrema salsugineum
Thhalv10021297m.g
N
0.872
SELMODRAFT_71307
Selaginella moellendorffii
SELMODRAFT_71307
I
0.872
SELMODRAFT_86855
Selaginella moellendorffii
SELMODRAFT_86855
I
0.872
BGIOSGA008492
Oryza indica
BGIOSGA008492
I
0.871
OGLUM02G22030
Oryza glumaepatula
OGLUM02G22030
I
0.871
ONIVA02G24080
Oryza nivara
ONIVA02G24080
I
0.871
OBART02G21850
Oryza barthii
OBART02G21850
I
0.871
OMERI02G21390
Oryza meridionalis
OMERI02G21390
I
0.871
ORUFI02G22930
Oryza rufipogon
ORUFI02G22930
I
0.871
OS02G0579000
Oryza sativa
OS02G0579000
I
0.871
GRMZM5G898290
Zea mays
GRMZM5G898290
N
0.871