Cagra.9217s0020 (Capsella grandiflora)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Cagra.9217s0020 T297447_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC050
M07200_2.00 		Arabidopsis thaliana
CTTGHNNYNCAAGNA
TNCTTGNRNNDCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_colamp_a 		0.915 0.728
ANAC050
M07201_2.00 		Arabidopsis thaliana
CTTGNNNHRCAMGBHA
TDVCKTGYDNNNCAAG		 Dap-seq
OMalley et al.(2016)
ANAC050_col_v3a 		0.915 0.728
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.9217s0020.1.p NAC/NAM 26 154

Links

Other NAC/NAM family TFs
Other Capsella grandiflora TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANAC052 Arabidopsis thaliana AT3G10490 I 0.924
ANAC050 Arabidopsis thaliana AT3G10480 D 0.923
Bra034119 Brassica rapa Bra034119 I 0.918
Bo1g143840 Brassica oleracea Bo1g143840 I 0.918
Bostr.22252s0011 Boechera stricta Bostr.22252s0011 I 0.915
ANAC052 Arabidopsis lyrata fgenesh2_kg.3__1083__AT3G10490.2 I 0.915
Bostr.22252s0012 Boechera stricta Bostr.22252s0012 I 0.915
Cagra.0834s0029 Capsella grandiflora Cagra.0834s0029 I 0.915
Carubv10013694m.g Capsella rubella Carubv10013694m.g I 0.915
ANAC050 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000864 I 0.915
Cagra.0834s0028 Capsella grandiflora Cagra.0834s0028 I 0.911
Carubv10013564m.g Capsella rubella Carubv10013564m.g I 0.911
Thhalv10020717m.g Eutrema salsugineum Thhalv10020717m.g I 0.911
Thhalv10020745m.g Eutrema salsugineum Thhalv10020745m.g I 0.911
Gorai.009G309300 Gossypium raimondii Gorai.009G309300 I 0.907
Bo1g143850 Brassica oleracea Bo1g143850 I 0.906
Bra034118 Brassica rapa Bra034118 I 0.906
Gorai.012G007000 Gossypium raimondii Gorai.012G007000 I 0.901
Bostr.2128s0008 Boechera stricta Bostr.2128s0008 N 0.901
cassava22912.valid.m1 Manihot esculenta cassava22912.valid.m1 I 0.895
Lus10037939.g Linum usitatissimum Lus10037939.g I 0.894
Lus10038670.g Linum usitatissimum Lus10038670.g I 0.894
orange1.1g014130m.g Citrus sinensis orange1.1g014130m.g I 0.892
Ciclev10031606m.g Citrus clementina Ciclev10031606m.g I 0.892
TCM_043357 Theobroma cacao TCM_043357 I 0.891
SapurV1A.0213s0310 Salix purpurea SapurV1A.0213s0310 I 0.890
POPTR_0010s23630 Populus trichocarpa POPTR_0010s23630 I 0.889
Bra029844 Brassica rapa Bra029844 I 0.888
Carubv10003768m.g Capsella rubella Carubv10003768m.g I 0.888
Bo5g137360 Brassica oleracea Bo5g137360 I 0.888
BRADI3G12470 Brachypodium distachyon BRADI3G12470 I 0.887
Si013361m.g Setaria italica Si013361m.g I 0.874
Pavir.Fa00048 Panicum virgatum Pavir.Fa00048 I 0.873
Bra001365 Brassica rapa Bra001365 I 0.873
Pavir.Fb02407 Panicum virgatum Pavir.Fb02407 I 0.873
Bo3g062700 Brassica oleracea Bo3g062700 I 0.873
Sb07g023900 Sorghum bicolor Sb07g023900 I 0.872
Bra001366 Brassica rapa Bra001366 I 0.872
Gorai.011G234200 Gossypium raimondii Gorai.011G234200 I 0.872
MDP0000258167 Malus domestica MDP0000258167 I 0.871
TRIUR3_33524 Triticum urartu TRIUR3_33524 I 0.870
F775_27564 Aegilops tauschii F775_27564 I 0.870
Traes_7BL_FB5FAC1E8 Triticum aestivum Traes_7BL_FB5FAC1E8 I 0.870
Traes_7DS_9FBF54244 Triticum aestivum Traes_7DS_9FBF54244 I 0.870