Carubv10003260m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10003260m.g T297462_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG

CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.992 0.904
NAC68
M07214_2.00
Arabidopsis thaliana
RCTTVYNBNNYAAGY

RCTTRNNVNRBAAGY
Dap-seq
OMalley et al.(2016)
NTM1_col_a
0.950 0.739
NAC68
M07215_2.00
Arabidopsis thaliana
HDYYRCTTTTTNNHYHYHNNN

NNNDRDRDNNAAAAAGYRRHD
Dap-seq
OMalley et al.(2016)
NTM1_colamp_a
0.950 0.739
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003260m NAC/NAM 5 135

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.4825s0023 Boechera stricta Bostr.4825s0023 I 0.993
anac069 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002854 I 0.992
NAC69 Arabidopsis thaliana AT4G01550 D 0.992
Bra008553 Brassica rapa Bra008553 I 0.991
Bo00853s060 Brassica oleracea Bo00853s060 I 0.989
Thhalv10028684m.g Eutrema salsugineum Thhalv10028684m.g I 0.988
Bra036328 Brassica rapa Bra036328 I 0.983
Bo9g004070 Brassica oleracea Bo9g004070 I 0.979
Bo6g119080 Brassica oleracea Bo6g119080 I 0.976
Bo9g004090 Brassica oleracea Bo9g004090 I 0.976
Bo9g004110 Brassica oleracea Bo9g004110 I 0.974
Bra036326 Brassica rapa Bra036326 I 0.971
Bo9g004100 Brassica oleracea Bo9g004100 I 0.970
Carubv10000489m.g Capsella rubella Carubv10000489m.g I 0.966
Bra036327 Brassica rapa Bra036327 I 0.965
anac067 Arabidopsis thaliana AT4G01520 I 0.960
Bra027596 Brassica rapa Bra027596 I 0.956
NAC68 Arabidopsis thaliana AT4G01540 D 0.950
Bostr.25375s0002 Boechera stricta Bostr.25375s0002 I 0.949
Cagra.12529s0001 Capsella grandiflora Cagra.12529s0001 I 0.946
Cagra.0334s0001 Capsella grandiflora Cagra.0334s0001 I 0.942
Bostr.10064s0010 Boechera stricta Bostr.10064s0010 I 0.933
SapurV1A.0003s0330 Salix purpurea SapurV1A.0003s0330 I 0.932
Bo9g061230 Brassica oleracea Bo9g061230 I 0.932
Bostr.4825s0021 Boechera stricta Bostr.4825s0021 I 0.926
SapurV1A.0024s0340 Salix purpurea SapurV1A.0024s0340 I 0.925
Gorai.004G125900 Gossypium raimondii Gorai.004G125900 I 0.924
MTR_8g023840 Medicago truncatula MTR_8g023840 I 0.923
ANAC001 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000119 I 0.923
Bo5g002850 Brassica oleracea Bo5g002850 I 0.921
Bo5g002810 Brassica oleracea Bo5g002810 I 0.920
Bostr.5325s0009 Boechera stricta Bostr.5325s0009 I 0.920
MDP0000575835 Malus domestica MDP0000575835 I 0.919
MDP0000214515 Malus domestica MDP0000214515 I 0.918
POPTR_0014s10330 Populus trichocarpa POPTR_0014s10330 I 0.918
Solyc03g080090.2 Solanum lycopersicum Solyc03g080090.2 I 0.916
POPTR_0002s18290 Populus trichocarpa POPTR_0002s18290 I 0.915
fgenesh1_pg.C_scaffold_3000386 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000386 I 0.914
POPTR_0002s15560 Populus trichocarpa POPTR_0002s15560 I 0.914
PGSC0003DMG400000555 Solanum tuberosum PGSC0003DMG400000555 I 0.913
Sb07g003900 Sorghum bicolor Sb07g003900 I 0.911
POPTR_0014s07210 Populus trichocarpa POPTR_0014s07210 I 0.910
MDP0000231843 Malus domestica MDP0000231843 I 0.910
POPTR_0002s18310 Populus trichocarpa POPTR_0002s18310 I 0.910
MDP0000282616 Malus domestica MDP0000282616 I 0.909
POPTR_0014s10350 Populus trichocarpa POPTR_0014s10350 I 0.909
POPTR_0002s18320 Populus trichocarpa POPTR_0002s18320 I 0.909
POPTR_0014s10360 Populus trichocarpa POPTR_0014s10360 I 0.909
Thhalv10007665m.g Eutrema salsugineum Thhalv10007665m.g I 0.907
Gorai.006G203800 Gossypium raimondii Gorai.006G203800 I 0.906
OLONG_000105 Oryza longistaminata OLONG_000105 I 0.903
OB08G13730 Oryza brachyantha OB08G13730 I 0.903
GRMZM2G003715 Zea mays GRMZM2G003715 I 0.903
OBART08G03460 Oryza barthii OBART08G03460 I 0.903
OMERI08G03500 Oryza meridionalis OMERI08G03500 I 0.903
OGLUM08G03540 Oryza glumaepatula OGLUM08G03540 I 0.903
OPUNC08G03310 Oryza punctata OPUNC08G03310 I 0.903
ORGLA08G0029000 Oryza glaberrima ORGLA08G0029000 I 0.903
MTR_8g023930 Medicago truncatula MTR_8g023930 I 0.901
MTR_8g023860 Medicago truncatula MTR_8g023860 I 0.901
GSMUA_Achr11G16860_001 Musa acuminata GSMUA_Achr11G16860_001 I 0.899
mgf022344m Mimulus guttatus mgf022344m I 0.897
Bostr.5325s0019 Boechera stricta Bostr.5325s0019 I 0.897
F775_30082 Aegilops tauschii F775_30082 I 0.897
MLOC_50406 Hordeum vulgare MLOC_50406 I 0.897
Traes_7BL_0C386426A Triticum aestivum Traes_7BL_0C386426A I 0.897
Traes_7DL_AB67A0B36 Triticum aestivum Traes_7DL_AB67A0B36 I 0.897
TRIUR3_32613 Triticum urartu TRIUR3_32613 I 0.897
Traes_7AL_669D4AE47 Triticum aestivum Traes_7AL_669D4AE47 I 0.897
Pavir.Fb00405 Panicum virgatum Pavir.Fb00405 I 0.896
SapurV1A.0586s0170 Salix purpurea SapurV1A.0586s0170 I 0.896
Ca_20988 Cicer arietinum Ca_20988 I 0.895
Cagra.1968s0045 Capsella grandiflora Cagra.1968s0045 I 0.894
Carubv10009049m.g Capsella rubella Carubv10009049m.g I 0.894
LPERR08G03510 Leersia perrieri LPERR08G03510 I 0.894
SapurV1A.0162s0450 Salix purpurea SapurV1A.0162s0450 I 0.893
ONIVA08G03440 Oryza nivara ONIVA08G03440 I 0.893
BGIOSGA027623 Oryza indica BGIOSGA027623 I 0.893
OS08G0157900 Oryza sativa OS08G0157900 I 0.893
ORUFI08G03870 Oryza rufipogon ORUFI08G03870 I 0.893
BRADI3G16480 Brachypodium distachyon BRADI3G16480 I 0.892
Carubv10009451m.g Capsella rubella Carubv10009451m.g I 0.891
GSMUA_AchrUn_randomG04060_001 Musa acuminata GSMUA_AchrUn_randomG04060_001 I 0.891
Pm028722 Prunus mume Pm028722 I 0.889
Pavir.Fa01901 Panicum virgatum Pavir.Fa01901 I 0.889
Si013369m.g Setaria italica Si013369m.g I 0.889
GLYMA14G36840 Glycine max GLYMA14G36840 I 0.888
GSMUA_Achr1G03560_001 Musa acuminata GSMUA_Achr1G03560_001 I 0.887
AMTR_s00018p00071850 Amborella trichopoda AMTR_s00018p00071850 I 0.887
GSMUA_Achr3G00330_001 Musa acuminata GSMUA_Achr3G00330_001 I 0.887
Ca_27204 Cicer arietinum Ca_27204 I 0.885
VIT_15s0048g02300 Vitis vinifera VIT_15s0048g02300 N 0.883
TCM_015535 Theobroma cacao TCM_015535 I 0.881
Pm019659 Prunus mume Pm019659 I 0.880
SapurV1A.0321s0350 Salix purpurea SapurV1A.0321s0350 I 0.879
AMTR_s00018p00074980 Amborella trichopoda AMTR_s00018p00074980 I 0.878
Bostr.5325s0008 Boechera stricta Bostr.5325s0008 I 0.878
Bostr.5325s0018 Boechera stricta Bostr.5325s0018 I 0.877
SELMODRAFT_69090 Selaginella moellendorffii SELMODRAFT_69090 I 0.876
Cagra.27691s0001 Capsella grandiflora Cagra.27691s0001 I 0.876
gene08448-v1.0-hybrid Fragaria vesca gene08448-v1.0-hybrid I 0.876
Lus10032919.g Linum usitatissimum Lus10032919.g I 0.876
SapurV1A.0093s0260 Salix purpurea SapurV1A.0093s0260 I 0.875
SapurV1A.0321s0360 Salix purpurea SapurV1A.0321s0360 I 0.874
SapurV1A.0321s0340 Salix purpurea SapurV1A.0321s0340 I 0.874
PRUPE_ppa017765mg Prunus persica PRUPE_ppa017765mg I 0.874
SELMODRAFT_71305 Selaginella moellendorffii SELMODRAFT_71305 I 0.874
MDP0000311190 Malus domestica MDP0000311190 I 0.873
evm.TU.contig_29561 Carica papaya evm.TU.contig_29561 I 0.872
cassava29774.valid.m1 Manihot esculenta cassava29774.valid.m1 I 0.871
Eucgr.K02303 Eucalyptus grandis Eucgr.K02303 I 0.871
cassava29775.valid.m1 Manihot esculenta cassava29775.valid.m1 I 0.871