CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Carubv10003260m.g
(
Capsella rubella
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Carubv10003260m.g
T297462_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.992
0.904
NAC68
M07214_2.00
Arabidopsis thaliana
RCTTVYNBNNYAAGY
RCTTRNNVNRBAAGY
Dap-seq
OMalley et al.(2016)
NTM1_col_a
0.950
0.739
NAC68
M07215_2.00
Arabidopsis thaliana
HDYYRCTTTTTNNHYHYHNNN
NNNDRDRDNNAAAAAGYRRHD
Dap-seq
OMalley et al.(2016)
NTM1_colamp_a
0.950
0.739
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10003260m
NAC/NAM
5
135
LVGYRFSPTGEELINHYLKNKILGKNWLVDEAIGEINICNYEPFYLPSLSKIQSDDLVWYFFSPKEYTSVKKKVIKRTTSSGYWKATGVDRKIKDKRGNRGEIGIKKTLVYYEGRVPNGVWTPWVMHEYHI
Links
Other
NAC/NAM
family TFs
Other
Capsella rubella
TFs
112 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.4825s0023
Boechera stricta
Bostr.4825s0023
I
0.993
anac069
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002854
I
0.992
NAC69
Arabidopsis thaliana
AT4G01550
D
0.992
Bra008553
Brassica rapa
Bra008553
I
0.991
Bo00853s060
Brassica oleracea
Bo00853s060
I
0.989
Thhalv10028684m.g
Eutrema salsugineum
Thhalv10028684m.g
I
0.988
Bra036328
Brassica rapa
Bra036328
I
0.983
Bo9g004070
Brassica oleracea
Bo9g004070
I
0.979
Bo6g119080
Brassica oleracea
Bo6g119080
I
0.976
Bo9g004090
Brassica oleracea
Bo9g004090
I
0.976
Bo9g004110
Brassica oleracea
Bo9g004110
I
0.974
Bra036326
Brassica rapa
Bra036326
I
0.971
Bo9g004100
Brassica oleracea
Bo9g004100
I
0.970
Carubv10000489m.g
Capsella rubella
Carubv10000489m.g
I
0.966
Bra036327
Brassica rapa
Bra036327
I
0.965
anac067
Arabidopsis thaliana
AT4G01520
I
0.960
Bra027596
Brassica rapa
Bra027596
I
0.956
NAC68
Arabidopsis thaliana
AT4G01540
D
0.950
Bostr.25375s0002
Boechera stricta
Bostr.25375s0002
I
0.949
Cagra.12529s0001
Capsella grandiflora
Cagra.12529s0001
I
0.946
Cagra.0334s0001
Capsella grandiflora
Cagra.0334s0001
I
0.942
Bostr.10064s0010
Boechera stricta
Bostr.10064s0010
I
0.933
SapurV1A.0003s0330
Salix purpurea
SapurV1A.0003s0330
I
0.932
Bo9g061230
Brassica oleracea
Bo9g061230
I
0.932
Bostr.4825s0021
Boechera stricta
Bostr.4825s0021
I
0.926
SapurV1A.0024s0340
Salix purpurea
SapurV1A.0024s0340
I
0.925
Gorai.004G125900
Gossypium raimondii
Gorai.004G125900
I
0.924
MTR_8g023840
Medicago truncatula
MTR_8g023840
I
0.923
ANAC001
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1000119
I
0.923
Bo5g002850
Brassica oleracea
Bo5g002850
I
0.921
Bo5g002810
Brassica oleracea
Bo5g002810
I
0.920
Bostr.5325s0009
Boechera stricta
Bostr.5325s0009
I
0.920
MDP0000575835
Malus domestica
MDP0000575835
I
0.919
MDP0000214515
Malus domestica
MDP0000214515
I
0.918
POPTR_0014s10330
Populus trichocarpa
POPTR_0014s10330
I
0.918
Solyc03g080090.2
Solanum lycopersicum
Solyc03g080090.2
I
0.916
POPTR_0002s18290
Populus trichocarpa
POPTR_0002s18290
I
0.915
fgenesh1_pg.C_scaffold_3000386
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000386
I
0.914
POPTR_0002s15560
Populus trichocarpa
POPTR_0002s15560
I
0.914
PGSC0003DMG400000555
Solanum tuberosum
PGSC0003DMG400000555
I
0.913
Sb07g003900
Sorghum bicolor
Sb07g003900
I
0.911
POPTR_0014s07210
Populus trichocarpa
POPTR_0014s07210
I
0.910
MDP0000231843
Malus domestica
MDP0000231843
I
0.910
POPTR_0002s18310
Populus trichocarpa
POPTR_0002s18310
I
0.910
MDP0000282616
Malus domestica
MDP0000282616
I
0.909
POPTR_0014s10350
Populus trichocarpa
POPTR_0014s10350
I
0.909
POPTR_0002s18320
Populus trichocarpa
POPTR_0002s18320
I
0.909
POPTR_0014s10360
Populus trichocarpa
POPTR_0014s10360
I
0.909
Thhalv10007665m.g
Eutrema salsugineum
Thhalv10007665m.g
I
0.907
Gorai.006G203800
Gossypium raimondii
Gorai.006G203800
I
0.906
OLONG_000105
Oryza longistaminata
OLONG_000105
I
0.903
OB08G13730
Oryza brachyantha
OB08G13730
I
0.903
GRMZM2G003715
Zea mays
GRMZM2G003715
I
0.903
OBART08G03460
Oryza barthii
OBART08G03460
I
0.903
OMERI08G03500
Oryza meridionalis
OMERI08G03500
I
0.903
OGLUM08G03540
Oryza glumaepatula
OGLUM08G03540
I
0.903
OPUNC08G03310
Oryza punctata
OPUNC08G03310
I
0.903
ORGLA08G0029000
Oryza glaberrima
ORGLA08G0029000
I
0.903
MTR_8g023930
Medicago truncatula
MTR_8g023930
I
0.901
MTR_8g023860
Medicago truncatula
MTR_8g023860
I
0.901
GSMUA_Achr11G16860_001
Musa acuminata
GSMUA_Achr11G16860_001
I
0.899
mgf022344m
Mimulus guttatus
mgf022344m
I
0.897
Bostr.5325s0019
Boechera stricta
Bostr.5325s0019
I
0.897
F775_30082
Aegilops tauschii
F775_30082
I
0.897
MLOC_50406
Hordeum vulgare
MLOC_50406
I
0.897
Traes_7BL_0C386426A
Triticum aestivum
Traes_7BL_0C386426A
I
0.897
Traes_7DL_AB67A0B36
Triticum aestivum
Traes_7DL_AB67A0B36
I
0.897
TRIUR3_32613
Triticum urartu
TRIUR3_32613
I
0.897
Traes_7AL_669D4AE47
Triticum aestivum
Traes_7AL_669D4AE47
I
0.897
Pavir.Fb00405
Panicum virgatum
Pavir.Fb00405
I
0.896
SapurV1A.0586s0170
Salix purpurea
SapurV1A.0586s0170
I
0.896
Ca_20988
Cicer arietinum
Ca_20988
I
0.895
Cagra.1968s0045
Capsella grandiflora
Cagra.1968s0045
I
0.894
Carubv10009049m.g
Capsella rubella
Carubv10009049m.g
I
0.894
LPERR08G03510
Leersia perrieri
LPERR08G03510
I
0.894
SapurV1A.0162s0450
Salix purpurea
SapurV1A.0162s0450
I
0.893
ONIVA08G03440
Oryza nivara
ONIVA08G03440
I
0.893
BGIOSGA027623
Oryza indica
BGIOSGA027623
I
0.893
OS08G0157900
Oryza sativa
OS08G0157900
I
0.893
ORUFI08G03870
Oryza rufipogon
ORUFI08G03870
I
0.893
BRADI3G16480
Brachypodium distachyon
BRADI3G16480
I
0.892
Carubv10009451m.g
Capsella rubella
Carubv10009451m.g
I
0.891
GSMUA_AchrUn_randomG04060_001
Musa acuminata
GSMUA_AchrUn_randomG04060_001
I
0.891
Pm028722
Prunus mume
Pm028722
I
0.889
Pavir.Fa01901
Panicum virgatum
Pavir.Fa01901
I
0.889
Si013369m.g
Setaria italica
Si013369m.g
I
0.889
GLYMA14G36840
Glycine max
GLYMA14G36840
I
0.888
GSMUA_Achr1G03560_001
Musa acuminata
GSMUA_Achr1G03560_001
I
0.887
AMTR_s00018p00071850
Amborella trichopoda
AMTR_s00018p00071850
I
0.887
GSMUA_Achr3G00330_001
Musa acuminata
GSMUA_Achr3G00330_001
I
0.887
Ca_27204
Cicer arietinum
Ca_27204
I
0.885
VIT_15s0048g02300
Vitis vinifera
VIT_15s0048g02300
N
0.883
TCM_015535
Theobroma cacao
TCM_015535
I
0.881
Pm019659
Prunus mume
Pm019659
I
0.880
SapurV1A.0321s0350
Salix purpurea
SapurV1A.0321s0350
I
0.879
AMTR_s00018p00074980
Amborella trichopoda
AMTR_s00018p00074980
I
0.878
Bostr.5325s0008
Boechera stricta
Bostr.5325s0008
I
0.878
Bostr.5325s0018
Boechera stricta
Bostr.5325s0018
I
0.877
SELMODRAFT_69090
Selaginella moellendorffii
SELMODRAFT_69090
I
0.876
Cagra.27691s0001
Capsella grandiflora
Cagra.27691s0001
I
0.876
gene08448-v1.0-hybrid
Fragaria vesca
gene08448-v1.0-hybrid
I
0.876
Lus10032919.g
Linum usitatissimum
Lus10032919.g
I
0.876
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
0.875
SapurV1A.0321s0360
Salix purpurea
SapurV1A.0321s0360
I
0.874
SapurV1A.0321s0340
Salix purpurea
SapurV1A.0321s0340
I
0.874
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
0.874
SELMODRAFT_71305
Selaginella moellendorffii
SELMODRAFT_71305
I
0.874
MDP0000311190
Malus domestica
MDP0000311190
I
0.873
evm.TU.contig_29561
Carica papaya
evm.TU.contig_29561
I
0.872
cassava29774.valid.m1
Manihot esculenta
cassava29774.valid.m1
I
0.871
Eucgr.K02303
Eucalyptus grandis
Eucgr.K02303
I
0.871
cassava29775.valid.m1
Manihot esculenta
cassava29775.valid.m1
I
0.871