CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10007390m.g
(
Capsella rubella
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Carubv10007390m.g
T297476_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
anac071
M07219_2.00
Arabidopsis thaliana
CTTSHNNYHCAMGYW
WRCKTGDRNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC071_col_a
0.947
0.908
anac071
M07220_2.00
Arabidopsis thaliana
CTTSHNNNNSAMGYA
TRCKTSNNNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC071_colamp_a
0.947
0.908
anac096
M07237_2.00
Arabidopsis thaliana
CTTSHNNNNBAMGHAAYC
GRTTDCKTVNNNNDSAAG
Dap-seq
OMalley et al.(2016)
ANAC096_colamp_a
0.923
0.817
anac096
M07238_2.00
Arabidopsis thaliana
TTNCTTSWNNHNYAMG
CKTRNDNNWSAAGNAA
Dap-seq
OMalley et al.(2016)
ANAC096_col
0.923
0.817
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10007390m
NAC/NAM
7
135
PPGFRFHPTDDELISYYLSRKVEGLEIELEVIPVIELYKFDPWDLPDKSFLPNRDLEWFFFCPRDKKYPNGSRTNRATKAGYWKATGKDRKITCKSSRVIIGYRKTIVFYEGRAPLGDRTNWFMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Capsella rubella
TFs
82 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.3356s0092
Capsella grandiflora
Cagra.3356s0092
I
0.965
anac071
Arabidopsis lyrata
Al_scaffold_0007_2395
I
0.954
Bostr.30275s0267
Boechera stricta
Bostr.30275s0267
I
0.953
anac071
Arabidopsis thaliana
AT4G17980
D
0.947
Bra012626
Brassica rapa
Bra012626
I
0.947
Bra013272
Brassica rapa
Bra013272
I
0.946
Bo1g019130
Brassica oleracea
Bo1g019130
I
0.946
MTR_5g014300
Medicago truncatula
MTR_5g014300
I
0.943
BGIOSGA033482
Oryza indica
BGIOSGA033482
I
0.942
OBART10G19230
Oryza barthii
OBART10G19230
I
0.942
OB10G26350
Oryza brachyantha
OB10G26350
I
0.942
cassava22941.valid.m1
Manihot esculenta
cassava22941.valid.m1
I
0.942
OGLUM10G19330
Oryza glumaepatula
OGLUM10G19330
I
0.942
ORUFI10G20470
Oryza rufipogon
ORUFI10G20470
I
0.942
OMERI07G08100
Oryza meridionalis
OMERI07G08100
I
0.942
OPUNC10G17630
Oryza punctata
OPUNC10G17630
I
0.942
MDP0000936269
Malus domestica
MDP0000936269
I
0.942
Cucsa.313350
Cucumis sativus
Cucsa.313350
I
0.942
ONIVA10G21790
Oryza nivara
ONIVA10G21790
I
0.942
ORGLA10G0144100
Oryza glaberrima
ORGLA10G0144100
I
0.942
gene10722-v1.0-hybrid
Fragaria vesca
gene10722-v1.0-hybrid
I
0.942
OLONG_018722
Oryza longistaminata
OLONG_018722
I
0.942
Cla016424
Citrullus lanatus
Cla016424
I
0.941
Bo7g105630
Brassica oleracea
Bo7g105630
I
0.941
LPERR10G15090
Leersia perrieri
LPERR10G15090
I
0.940
anac096
Arabidopsis lyrata
fgenesh2_kg.8__135__AT5G46590.1
I
0.940
POPTR_0003s08830
Populus trichocarpa
POPTR_0003s08830
I
0.940
SapurV1A.0846s0080
Salix purpurea
SapurV1A.0846s0080
I
0.939
PK00339.1
Cannabis sativa
PK00339.1
I
0.939
Gorai.008G227800
Gossypium raimondii
Gorai.008G227800
I
0.938
GRMZM2G082709
Zea mays
GRMZM2G082709
I
0.938
BRADI3G33957
Brachypodium distachyon
BRADI3G33957
I
0.938
Pm023277
Prunus mume
Pm023277
I
0.937
PRUPE_ppa007828mg
Prunus persica
PRUPE_ppa007828mg
I
0.937
Cagra.0569s0030
Capsella grandiflora
Cagra.0569s0030
I
0.937
Carubv10028284m.g
Capsella rubella
Carubv10028284m.g
I
0.937
evm.TU.supercontig_90.52
Carica papaya
evm.TU.supercontig_90.52
I
0.935
Thhalv10001200m.g
Eutrema salsugineum
Thhalv10001200m.g
I
0.934
Pavir.Ia03491
Panicum virgatum
Pavir.Ia03491
I
0.934
Si036301m.g
Setaria italica
Si036301m.g
I
0.934
Sb01g028450
Sorghum bicolor
Sb01g028450
I
0.934
Bra025012
Brassica rapa
Bra025012
I
0.934
Bo7g075540
Brassica oleracea
Bo7g075540
I
0.934
F775_28577
Aegilops tauschii
F775_28577
I
0.933
MLOC_58950
Hordeum vulgare
MLOC_58950
I
0.933
Bra022046
Brassica rapa
Bra022046
I
0.933
Lus10035373.g
Linum usitatissimum
Lus10035373.g
I
0.933
Ciclev10031966m.g
Citrus clementina
Ciclev10031966m.g
I
0.933
orange1.1g018835m.g
Citrus sinensis
orange1.1g018835m.g
I
0.933
Traes_1BL_8925B27BC
Triticum aestivum
Traes_1BL_8925B27BC
I
0.933
Traes_1AL_D6C49C3BC
Triticum aestivum
Traes_1AL_D6C49C3BC
I
0.933
29827.m002555
Ricinus communis
29827.m002555
I
0.931
Lus10030978.g
Linum usitatissimum
Lus10030978.g
I
0.931
VIT_02s0012g01040
Vitis vinifera
VIT_02s0012g01040
I
0.930
POPTR_0001s02710
Populus trichocarpa
POPTR_0001s02710
I
0.929
Ca_02274
Cicer arietinum
Ca_02274
I
0.928
Bo2g130240
Brassica oleracea
Bo2g130240
I
0.927
GLYMA05G23840
Glycine max
GLYMA05G23840
I
0.926
SapurV1A.0900s0060
Salix purpurea
SapurV1A.0900s0060
I
0.925
anac096
Arabidopsis thaliana
AT5G46590
D
0.923
Solyc08g077110.2
Solanum lycopersicum
Solyc08g077110.2
I
0.923
Eucgr.D02182
Eucalyptus grandis
Eucgr.D02182
I
0.923
GLYMA17G16500
Glycine max
GLYMA17G16500
I
0.923
Thhalv10027064m.g
Eutrema salsugineum
Thhalv10027064m.g
I
0.923
Eucgr.E00298
Eucalyptus grandis
Eucgr.E00298
I
0.922
TCM_015749
Theobroma cacao
TCM_015749
I
0.922
Ca_12837
Cicer arietinum
Ca_12837
I
0.921
Pavir.Ib02435
Panicum virgatum
Pavir.Ib02435
I
0.921
Gorai.004G186700
Gossypium raimondii
Gorai.004G186700
I
0.921
TRIUR3_22131
Triticum urartu
TRIUR3_22131
I
0.920
Gorai.003G180600
Gossypium raimondii
Gorai.003G180600
I
0.917
PGSC0003DMG400017505
Solanum tuberosum
PGSC0003DMG400017505
I
0.915
GSMUA_Achr5G03360_001
Musa acuminata
GSMUA_Achr5G03360_001
I
0.913
Gorai.007G031300
Gossypium raimondii
Gorai.007G031300
I
0.910
MDP0000119446
Malus domestica
MDP0000119446
I
0.908
GSMUA_Achr11G17780_001
Musa acuminata
GSMUA_Achr11G17780_001
I
0.901
chr2.CM0021.650.nc
Lotus japonicus
chr2.CM0021.650.nc
I
0.896
AMTR_s00149p00068500
Amborella trichopoda
AMTR_s00149p00068500
I
0.892
Bostr.4485s0006
Boechera stricta
Bostr.4485s0006
I
0.890
Traes_1DL_A556D8590
Triticum aestivum
Traes_1DL_A556D8590
N
0.887
Solyc06g061080.2
Solanum lycopersicum
Solyc06g061080.2
I
0.878
MTR_4g098630
Medicago truncatula
MTR_4g098630
I
0.874