Carubv10008817m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10008817m.g T297483_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ANAC13
M07170_2.00
Arabidopsis thaliana
TDNCTTGYYNNNCAAG

CTTGNNNRRCAAGNHA
Dap-seq
OMalley et al.(2016)
ANAC013_col_a
0.966 0.974
ANAC13
M07171_2.00
Arabidopsis thaliana
CTTGYBHNNCAAGNHAH

DTDNCTTGNNDVRCAAG
Dap-seq
OMalley et al.(2016)
ANAC013_colamp_a
0.966 0.974
ANAC13
M11077_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ANAC013_Q2
0.966 0.974
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10008817m NAC/NAM 12 136

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ANAC13 Arabidopsis thaliana AT1G32870 D 0.966
ANAC13 Arabidopsis lyrata fgenesh2_kg.1__3425__AT1G32870.2 I 0.962
Bo7g057730 Brassica oleracea Bo7g057730 I 0.936
Bostr.3359s0074 Boechera stricta Bostr.3359s0074 I 0.963
Bra012342 Brassica rapa Bra012342 I 0.915
Cagra.1443s0015 Capsella grandiflora Cagra.1443s0015 I 0.968
Cla013854 Citrullus lanatus Cla013854 I 0.875
evm.TU.supercontig_26.135 Carica papaya evm.TU.supercontig_26.135 I 0.878
Gorai.009G260000 Gossypium raimondii Gorai.009G260000 I 0.877
MDP0000146969 Malus domestica MDP0000146969 I 0.893
MDP0000169485 Malus domestica MDP0000169485 I 0.893
MDP0000852271 Malus domestica MDP0000852271 I 0.872
mg018130m Mimulus guttatus mg018130m I 0.880
PGSC0003DMG400031149 Solanum tuberosum PGSC0003DMG400031149 I 0.888
POPTR_0002s06210 Populus trichocarpa POPTR_0002s06210 I 0.896
POPTR_0005s22180 Populus trichocarpa POPTR_0005s22180 I 0.888
SapurV1A.0134s0420 Salix purpurea SapurV1A.0134s0420 I 0.898
Solyc04g072220.2 Solanum lycopersicum Solyc04g072220.2 I 0.896
Solyc12g056790.1 Solanum lycopersicum Solyc12g056790.1 I 0.876
Thhalv10007369m.g Eutrema salsugineum Thhalv10007369m.g I 0.945