Carubv10009390m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10009390m.g T297487_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC004
M07161_2.00 		Arabidopsis thaliana
CTTVYNYNRYAAGY
RCTTRYNRNRBAAG		 Dap-seq
OMalley et al.(2016)
ANAC004_col_a 		0.927 0.635
NAC004
M07162_2.00 		Arabidopsis thaliana
WVCTTVYNBNRYAAGYWWBNN
NNVWWRCTTRYNVNRBAAGBW		 Dap-seq
OMalley et al.(2016)
ANAC004_colamp_a 		0.927 0.635
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009390m NAC/NAM 15 143

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1968s0041 Capsella grandiflora Cagra.1968s0041 I 0.995
anac048 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000114 I 0.969
anac048 Arabidopsis thaliana AT3G04420 I 0.946
NAC004 Arabidopsis thaliana AT1G02230 D 0.927
ANAC004 Arabidopsis lyrata Al_scaffold_0001_137 I 0.921
Bostr.8819s0187 Boechera stricta Bostr.8819s0187 I 0.917
Bostr.5325s0016 Boechera stricta Bostr.5325s0016 I 0.913
anac005 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000123 I 0.908
Bo5g002950 Brassica oleracea Bo5g002950 I 0.873
Bra033306 Brassica rapa Bra033306 I 0.872