CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10009451m.g
(
Capsella rubella
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
Carubv10009451m.g
T297488_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC69
M07216_2.00
Arabidopsis thaliana
WMCTTVTNNNNYAAG
CTTRNNNNABAAGKW
Dap-seq
OMalley et al.(2016)
NTM2_col_b
0.910
0.487
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10009451m
NAC/NAM
4
136
MVGFEFRPNDEELVGHYLRNKIEGDTSLVDTAIPEVNICSYDPWDLRRQSKIRSKYPVSVWYFFSRRENGIRQNRRTPSGFWKLTGESVDVNDQWGFWTGAQGKIGHKRVLVFLKGRGSQQTKSDWVMHEFHY
Carubv10009870m
NAC/NAM
4
136
MVGFEFRPNDEELVGHYLRNKIEGDTSLVDTAIPEVNICSYDPWDLRRQSKIRSKYPVSVWYFFSRRENGIRQNRRTPSGFWKLTGESVDVNDQWGFWTGAQGKIGHKRVLVFLKGRGSQQTKSDWVMHEFHY
Links
Other
NAC/NAM
family TFs
Other
Capsella rubella
TFs
134 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10009049m.g
Capsella rubella
Carubv10009049m.g
I
0.984
Cagra.1968s0045
Capsella grandiflora
Cagra.1968s0045
I
0.984
Bo5g002810
Brassica oleracea
Bo5g002810
I
0.977
Thhalv10007665m.g
Eutrema salsugineum
Thhalv10007665m.g
I
0.977
ANAC001
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1000119
I
0.976
Bo5g002850
Brassica oleracea
Bo5g002850
I
0.973
Bostr.5325s0019
Boechera stricta
Bostr.5325s0019
I
0.969
Bostr.5325s0009
Boechera stricta
Bostr.5325s0009
I
0.968
Bra033296
Brassica rapa
Bra033296
I
0.953
Pm028711
Prunus mume
Pm028711
I
0.941
Bo9g004070
Brassica oleracea
Bo9g004070
I
0.940
Ca_20988
Cicer arietinum
Ca_20988
I
0.939
mgf022344m
Mimulus guttatus
mgf022344m
I
0.939
Bostr.25375s0002
Boechera stricta
Bostr.25375s0002
I
0.935
Bra036328
Brassica rapa
Bra036328
I
0.933
Bostr.5325s0011
Boechera stricta
Bostr.5325s0011
I
0.932
Bo5g002860
Brassica oleracea
Bo5g002860
N
0.931
Aquca_009_00966
Aquilegia coerulea
Aquca_009_00966
I
0.928
MTR_8g023840
Medicago truncatula
MTR_8g023840
I
0.926
MDP0000282616
Malus domestica
MDP0000282616
I
0.921
Bo5g002830
Brassica oleracea
Bo5g002830
N
0.918
AMTR_s00018p00071850
Amborella trichopoda
AMTR_s00018p00071850
I
0.918
Solyc08g074300.2
Solanum lycopersicum
Solyc08g074300.2
I
0.917
PGSC0003DMG400029593
Solanum tuberosum
PGSC0003DMG400029593
I
0.913
Bostr.4825s0023
Boechera stricta
Bostr.4825s0023
I
0.912
Bo9g004090
Brassica oleracea
Bo9g004090
I
0.912
Bo6g119080
Brassica oleracea
Bo6g119080
I
0.912
Bostr.0556s0555
Boechera stricta
Bostr.0556s0555
I
0.911
anac069
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002854
I
0.910
NAC69
Arabidopsis thaliana
AT4G01550
D
0.910
AMTR_s00022p00160350
Amborella trichopoda
AMTR_s00022p00160350
I
0.910
POPTR_0002s18320
Populus trichocarpa
POPTR_0002s18320
I
0.909
VIT_15s0048g02320
Vitis vinifera
VIT_15s0048g02320
I
0.908
SapurV1A.0024s0340
Salix purpurea
SapurV1A.0024s0340
I
0.907
PRUPE_ppb017658mg
Prunus persica
PRUPE_ppb017658mg
I
0.905
OPUNC08G18240
Oryza punctata
OPUNC08G18240
I
0.905
LPERR08G17020
Leersia perrieri
LPERR08G17020
I
0.905
OS08G0511200
Oryza sativa
OS08G0511200
I
0.901
ORGLA08G0177600
Oryza glaberrima
ORGLA08G0177600
I
0.901
ONIVA08G22710
Oryza nivara
ONIVA08G22710
I
0.901
ORUFI08G22550
Oryza rufipogon
ORUFI08G22550
I
0.901
OGLUM08G21360
Oryza glumaepatula
OGLUM08G21360
I
0.901
BGIOSGA026695
Oryza indica
BGIOSGA026695
I
0.901
SapurV1A.0586s0170
Salix purpurea
SapurV1A.0586s0170
I
0.900
MLOC_13932
Hordeum vulgare
MLOC_13932
I
0.899
GSMUA_Achr6G31580_001
Musa acuminata
GSMUA_Achr6G31580_001
I
0.899
Pm028722
Prunus mume
Pm028722
I
0.899
MTR_1g008740
Medicago truncatula
MTR_1g008740
I
0.897
GSMUA_Achr4G32010_001
Musa acuminata
GSMUA_Achr4G32010_001
I
0.897
MDP0000136652
Malus domestica
MDP0000136652
N
0.896
MDP0000182344
Malus domestica
MDP0000182344
N
0.896
AMTR_s00018p00074980
Amborella trichopoda
AMTR_s00018p00074980
I
0.896
PRUPE_ppa022384mg
Prunus persica
PRUPE_ppa022384mg
I
0.895
POPTR_0002s18290
Populus trichocarpa
POPTR_0002s18290
I
0.895
Bra027596
Brassica rapa
Bra027596
I
0.895
GRMZM2G003715
Zea mays
GRMZM2G003715
I
0.893
VIT_15s0048g02300
Vitis vinifera
VIT_15s0048g02300
N
0.892
Carubv10003260m.g
Capsella rubella
Carubv10003260m.g
I
0.891
Bra008553
Brassica rapa
Bra008553
I
0.891
Thhalv10028684m.g
Eutrema salsugineum
Thhalv10028684m.g
I
0.890
PGSC0003DMG400009920
Solanum tuberosum
PGSC0003DMG400009920
I
0.889
SapurV1A.0003s0330
Salix purpurea
SapurV1A.0003s0330
I
0.889
Bo00853s060
Brassica oleracea
Bo00853s060
I
0.889
Pm019659
Prunus mume
Pm019659
I
0.888
POPTR_0014s10330
Populus trichocarpa
POPTR_0014s10330
I
0.887
POPTR_0002s18310
Populus trichocarpa
POPTR_0002s18310
I
0.887
POPTR_0014s10350
Populus trichocarpa
POPTR_0014s10350
I
0.886
POPTR_0014s10360
Populus trichocarpa
POPTR_0014s10360
I
0.886
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
0.885
MLOC_37843
Hordeum vulgare
MLOC_37843
I
0.885
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
0.885
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
0.885
e_gw1.259.32.1
Physcomitrella patens
e_gw1.259.32.1
I
0.885
MTR_8g023860
Medicago truncatula
MTR_8g023860
I
0.884
Eucgr.G01067
Eucalyptus grandis
Eucgr.G01067
N
0.883
GRMZM2G139700
Zea mays
GRMZM2G139700
I
0.882
GSMUA_AchrUn_randomG04060_001
Musa acuminata
GSMUA_AchrUn_randomG04060_001
I
0.882
Bo9g004110
Brassica oleracea
Bo9g004110
I
0.882
Gorai.005G088800
Gossypium raimondii
Gorai.005G088800
I
0.881
SapurV1A.0321s0350
Salix purpurea
SapurV1A.0321s0350
I
0.881
F775_13961
Aegilops tauschii
F775_13961
I
0.880
OS04G0460600
Oryza sativa
OS04G0460600
I
0.880
fgenesh1_pg.C_scaffold_3000386
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000386
I
0.880
BGIOSGA016546
Oryza indica
BGIOSGA016546
I
0.880
ONIVA04G13100
Oryza nivara
ONIVA04G13100
I
0.880
OBART04G14970
Oryza barthii
OBART04G14970
I
0.880
BRADI4G37327
Brachypodium distachyon
BRADI4G37327
I
0.880
OGLUM04G14830
Oryza glumaepatula
OGLUM04G14830
I
0.880
ORUFI04G16370
Oryza rufipogon
ORUFI04G16370
I
0.880
ORGLA04G0119700
Oryza glaberrima
ORGLA04G0119700
I
0.880
gene18589-v1.0-hybrid
Fragaria vesca
gene18589-v1.0-hybrid
N
0.880
SapurV1A.0162s0450
Salix purpurea
SapurV1A.0162s0450
I
0.879
Thhalv10012158m.g
Eutrema salsugineum
Thhalv10012158m.g
I
0.879
Bostr.5325s0010
Boechera stricta
Bostr.5325s0010
N
0.878
MTR_8g023930
Medicago truncatula
MTR_8g023930
I
0.878
OB08G13730
Oryza brachyantha
OB08G13730
I
0.878
ORUFI08G03870
Oryza rufipogon
ORUFI08G03870
I
0.877
ONIVA08G03440
Oryza nivara
ONIVA08G03440
I
0.877
OGLUM08G03540
Oryza glumaepatula
OGLUM08G03540
I
0.877
Pavir.Gb01850
Panicum virgatum
Pavir.Gb01850
I
0.877
ORGLA08G0029000
Oryza glaberrima
ORGLA08G0029000
I
0.877
BGIOSGA027623
Oryza indica
BGIOSGA027623
I
0.877
OPUNC08G03310
Oryza punctata
OPUNC08G03310
I
0.877
gene08448-v1.0-hybrid
Fragaria vesca
gene08448-v1.0-hybrid
I
0.877
LPERR08G03510
Leersia perrieri
LPERR08G03510
I
0.877
OBART08G03460
Oryza barthii
OBART08G03460
I
0.877
OLONG_000105
Oryza longistaminata
OLONG_000105
I
0.877
OS08G0157900
Oryza sativa
OS08G0157900
I
0.877
OMERI08G03500
Oryza meridionalis
OMERI08G03500
I
0.877
VIT_19s0027g00840
Vitis vinifera
VIT_19s0027g00840
I
0.877
PRUPE_ppa023197mg
Prunus persica
PRUPE_ppa023197mg
N
0.876
Eucgr.F01463
Eucalyptus grandis
Eucgr.F01463
I
0.876
BRADI3G16480
Brachypodium distachyon
BRADI3G16480
I
0.876
Si010553m.g
Setaria italica
Si010553m.g
I
0.875
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
0.875
Sb06g019010
Sorghum bicolor
Sb06g019010
I
0.874
Traes_7DL_AB67A0B36
Triticum aestivum
Traes_7DL_AB67A0B36
I
0.874
TRIUR3_32613
Triticum urartu
TRIUR3_32613
I
0.874
F775_30082
Aegilops tauschii
F775_30082
I
0.874
MLOC_50406
Hordeum vulgare
MLOC_50406
I
0.874
Eucgr.I02571
Eucalyptus grandis
Eucgr.I02571
N
0.874
Traes_7BL_0C386426A
Triticum aestivum
Traes_7BL_0C386426A
I
0.874
Traes_7AL_669D4AE47
Triticum aestivum
Traes_7AL_669D4AE47
I
0.874
SapurV1A.0321s0340
Salix purpurea
SapurV1A.0321s0340
I
0.873
SapurV1A.0321s0360
Salix purpurea
SapurV1A.0321s0360
I
0.873
POPTR_0014s07210
Populus trichocarpa
POPTR_0014s07210
I
0.873
GSMUA_Achr7G21780_001
Musa acuminata
GSMUA_Achr7G21780_001
I
0.873
Si013369m.g
Setaria italica
Si013369m.g
I
0.873
e_gw1.164.18.1
Physcomitrella patens
e_gw1.164.18.1
I
0.872
Sb02g026510
Sorghum bicolor
Sb02g026510
I
0.871
SapurV1A.0003s0310
Salix purpurea
SapurV1A.0003s0310
N
0.871
Pavir.Fa01901
Panicum virgatum
Pavir.Fa01901
I
0.871
Solyc03g080090.2
Solanum lycopersicum
Solyc03g080090.2
I
0.871