Carubv10009727m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10009727m.g T297491_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC005
M07163_2.00 		Arabidopsis thaliana
WWNCTTVYNHHNYAAGTWW
WWACTTRNDDNRBAAGNWW		 Dap-seq
OMalley et al.(2016)
ANAC005_col_a 		0.885 0.667
NAC004
M07161_2.00 		Arabidopsis thaliana
CTTVYNYNRYAAGY
RCTTRYNRNRBAAG		 Dap-seq
OMalley et al.(2016)
ANAC004_col_a 		0.882 0.586
NAC004
M07162_2.00 		Arabidopsis thaliana
WVCTTVYNBNRYAAGYWWBNN
NNVWWRCTTRYNVNRBAAGBW		 Dap-seq
OMalley et al.(2016)
ANAC004_colamp_a 		0.882 0.586
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009727m NAC/NAM 9 138

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1968s0040 Capsella grandiflora Cagra.1968s0040 I 0.995
Bostr.5325s0017 Boechera stricta Bostr.5325s0017 I 0.980
Bo5g002960 Brassica oleracea Bo5g002960 I 0.924
Bo5g002950 Brassica oleracea Bo5g002950 I 0.920
Bra033306 Brassica rapa Bra033306 I 0.919
Bostr.5325s0006 Boechera stricta Bostr.5325s0006 I 0.916
Bra033303 Brassica rapa Bra033303 I 0.906
Bostr.5325s0016 Boechera stricta Bostr.5325s0016 I 0.904
Bra033308 Brassica rapa Bra033308 I 0.894
ANAC004 Arabidopsis lyrata Al_scaffold_0001_137 I 0.893
NAC005 Arabidopsis thaliana AT1G02250 D 0.885
NAC004 Arabidopsis thaliana AT1G02230 D 0.882