Carubv10014000m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10014000m.g T297507_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC047
M07198_2.00
Arabidopsis thaliana
CACGB

VCGTG
Dap-seq
OMalley et al.(2016)
ANAC047_colamp_a
0.957 0.920
NAC047
M07199_2.00
Arabidopsis thaliana
WNNNWYACGYMWYYN

NRRWKRCGTRWNNNW
Dap-seq
OMalley et al.(2016)
ANAC047_col
0.957 0.920
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014000m NAC/NAM 11 140

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NAC047 Arabidopsis thaliana AT3G04070 D 0.957
Cagra.2026s0001 Capsella grandiflora Cagra.2026s0001 I 0.969
Ciclev10020717m.g Citrus clementina Ciclev10020717m.g I 0.929
Eucgr.A02070 Eucalyptus grandis Eucgr.A02070 I 0.878
Gorai.007G267900 Gossypium raimondii Gorai.007G267900 I 0.906
Gorai.013G191800 Gossypium raimondii Gorai.013G191800 I 0.916
Lus10003269.g Linum usitatissimum Lus10003269.g I 0.918
Lus10006547.g Linum usitatissimum Lus10006547.g I 0.902
Lus10042531.g Linum usitatissimum Lus10042531.g I 0.918
orange1.1g017665m.g Citrus sinensis orange1.1g017665m.g I 0.929
SapurV1A.0867s0160 Salix purpurea SapurV1A.0867s0160 I 0.903
SapurV1A.1058s0080 Salix purpurea SapurV1A.1058s0080 I 0.927
SapurV1A.1196s0040 Salix purpurea SapurV1A.1196s0040 I 0.903
SapurV1A.2115s0010 Salix purpurea SapurV1A.2115s0010 I 0.927
Bostr.2570s0301 Boechera stricta Bostr.2570s0301 I 0.969
cassava35701.valid.m1 Manihot esculenta cassava35701.valid.m1 I 0.922
cassava22631.valid.m1 Manihot esculenta cassava22631.valid.m1 I 0.912
Bo1g152220 Brassica oleracea Bo1g152220 I 0.951
Bo5g148420 Brassica oleracea Bo5g148420 I 0.954
Bra031949 Brassica rapa Bra031949 I 0.946
Bra040152 Brassica rapa Bra040152 I 0.951
anac047 Arabidopsis lyrata fgenesh2_kg.3__367__AT3G04070.1 I 0.969
GLYMA16G04740 Glycine max GLYMA16G04740 I 0.872
GLYMA19G28476 Glycine max GLYMA19G28476 I 0.878
POPTR_0013s05080 Populus trichocarpa POPTR_0013s05080 I 0.916
POPTR_0019s04690 Populus trichocarpa POPTR_0019s04690 I 0.917
TCM_026030 Theobroma cacao TCM_026030 I 0.908
anac047 Vitis vinifera VIT_08s0007g07670 I 0.905
29950.m001173 Ricinus communis 29950.m001173 I 0.923
30078.m002348 Ricinus communis 30078.m002348 I 0.873
Thhalv10021011m.g Eutrema salsugineum Thhalv10021011m.g I 0.945